Proton Channels
From Proteopedia
(Difference between revisions)
| (15 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | <StructureSection load='' size='450' side='right' scene='Proton_Channels/Cartoon/2' caption='Linear interpolation morph from [[3bkd]] to model 1 of [[2rlf]]. '> | ||
| + | |||
The M2 protein of influenza A virus is a proton channel. Its function is essential for productive infection by the virus. | The M2 protein of influenza A virus is a proton channel. Its function is essential for productive infection by the virus. | ||
See [[:Category:Proton_channel]] for a list of all proton channel structures. | See [[:Category:Proton_channel]] for a list of all proton channel structures. | ||
| - | In January, 2008, crystallographic and NMR structures were published side by side in ''Nature'' for the transmembrane domains of the M2 protein: [[3bkd]] | + | In January, 2008, crystallographic and NMR structures were published side by side in ''Nature'' for the transmembrane domains of the M2 protein: [[3bkd]] to [[2rlf]]. The former appeared to be in an open conformation blocked by amantadine, while the latter appeared to be in a closed conformation stabilized by rimantadine. (Neither drug is shown in the morph at right.) |
| - | < | + | <!-- THESE LINKS DO NOT WORK IN THE CAPTION; NEITHER DOES THE FORM [[3bkd]] |
| - | At right is a [[Morphs|linear-interpolation morph]] between 3BKD and 2RLF, showing the proposed opening and closing of this channel. | + | caption='Linear interpolation morph from [http://proteopedia.org/wiki/index.php/3bkd 3bkd] to [http://proteopedia.org/wiki/index.php/2rlf 2rlf model 1] ' /> |
| + | --> | ||
| + | At right is a [[Morphs|linear-interpolation morph]] between 3BKD and 2RLF, showing the proposed opening and closing of this channel. {{Button_Toggle_Animation2}} | ||
| - | In addition to watching the animation as alpha-helical ribbons, it is useful to watch it <scene name='Proton_Channels/Spacefilled/1'>spacefilled</scene>. Be sure to rotate the molecule to watch the animation from different perspectives! | + | In addition to watching the animation as alpha-helical ribbons, it is useful to watch it <scene name='Proton_Channels/Spacefilled/1'>spacefilled</scene>. '''Be sure to rotate the molecule with your mouse to watch the animation from different perspectives!''' |
<scene name='Proton_Channels/Gating/1'>His37 and Trp41</scene> are believed to be crucial for pH-dependent gating. | <scene name='Proton_Channels/Gating/1'>His37 and Trp41</scene> are believed to be crucial for pH-dependent gating. | ||
| - | (The collapse and re-expansion of their sidechains is due to the [[Morphs|linear interpolation method]].) Here are His and Trp <scene name='Proton_Channels/Gating/2'>spacefilled</scene>. | + | (The apparent collapse and re-expansion of their sidechains is an artifact due to the [[Morphs|linear interpolation method of morphing]].) Here are His and Trp <scene name='Proton_Channels/Gating/2'>spacefilled</scene>. |
| + | |||
| + | To be explained in a later revision, along with new scenes: | ||
| + | [http://www.molmovdb.org/cgi-bin/morph.cgi?ID=b505428-6008 Morph from Yale] | ||
| + | |||
| + | {{Clear}} | ||
| + | |||
| + | ==3D structures of ion channels== | ||
| + | |||
| + | [[Ion channels]] | ||
| + | |||
| + | ==Additional Resources== | ||
| + | For additional information, see: [[Influenza]] <br /> | ||
| + | For additional information, see: [[Membrane Channels & Pumps]] | ||
| + | <br /> | ||
| + | <br /> | ||
| + | </StructureSection> | ||
Current revision
Proteopedia Page Contributors and Editors (what is this?)
Eric Martz, Eran Hodis, David Canner, Joel L. Sussman, Michal Harel, Alexander Berchansky, Jaime Prilusky
