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4hrd

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==Crystal structure of yeast 20S proteasome in complex with the natural product carmaphycin A==
==Crystal structure of yeast 20S proteasome in complex with the natural product carmaphycin A==
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<StructureSection load='4hrd' size='340' side='right' caption='[[4hrd]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
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<StructureSection load='4hrd' size='340' side='right'caption='[[4hrd]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4hrd]] is a 28 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast] and [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4HRD FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4hrd]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4HRD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4HRD FirstGlance]. <br>
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</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=OV1:N-[(2S)-1-({(2S)-1-{[(2R,3S,4S)-1,3-DIHYDROXY-2,6-DIMETHYLHEPTAN-4-YL]AMINO}-4-[(R)-METHYLSULFINYL]-1-OXOBUTAN-2-YL}AMINO)-3-METHYL-1-OXOBUTAN-2-YL]HEXANAMIDE'>OV1</scene><br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
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<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4hrc|4hrc]], [[4hnp|4hnp]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=OV1:N-[(2S)-1-({(2S)-1-{[(2R,3S,4S)-1,3-DIHYDROXY-2,6-DIMETHYLHEPTAN-4-YL]AMINO}-4-[(R)-METHYLSULFINYL]-1-OXOBUTAN-2-YL}AMINO)-3-METHYL-1-OXOBUTAN-2-YL]HEXANAMIDE'>OV1</scene></td></tr>
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<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Proteasome_endopeptidase_complex Proteasome endopeptidase complex], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.25.1 3.4.25.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4hrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hrd OCA], [https://pdbe.org/4hrd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4hrd RCSB], [https://www.ebi.ac.uk/pdbsum/4hrd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4hrd ProSAT]</span></td></tr>
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<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4hrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4hrd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4hrd RCSB], [http://www.ebi.ac.uk/pdbsum/4hrd PDBsum]</span></td></tr>
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</table>
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<table>
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== Function ==
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[https://www.uniprot.org/uniprot/PSA2_YEAST PSA2_YEAST] The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 4hrd" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
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*[[Proteasome|Proteasome]]
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*[[Proteasome 3D structures|Proteasome 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Baker's yeast]]
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[[Category: Large Structures]]
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[[Category: Proteasome endopeptidase complex]]
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[[Category: Saccharomyces cerevisiae S288C]]
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[[Category: Saccharomyces cerevisiae]]
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[[Category: Groll M]]
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[[Category: Groll, M.]]
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[[Category: Stein M]]
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[[Category: Stein, M.]]
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[[Category: Trivella DBB]]
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[[Category: Trivella, D B.B.]]
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[[Category: Carmaphycin]]
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[[Category: Epoxyketone]]
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[[Category: Hydrolase-hydrolase inhibitor complex]]
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[[Category: Inhibitor]]
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[[Category: Proteasome]]
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[[Category: Vinylketone]]
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Current revision

Crystal structure of yeast 20S proteasome in complex with the natural product carmaphycin A

PDB ID 4hrd

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