4z1l

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'''Unreleased structure'''
 
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The entry 4z1l is ON HOLD until Paper Publication
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==Yeast 20S proteasome in complex with belactosin C derivative 3==
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<StructureSection load='4z1l' size='340' side='right'caption='[[4z1l]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4z1l]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Z1L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Z1L FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4KF:(2S,3S)-2-{(1R)-2-[(3,5-DIMETHOXYBENZYL)AMINO]-1-HYDROXY-2-OXOETHYL}-3-METHYLPENTANOIC+ACID'>4KF</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4z1l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4z1l OCA], [https://pdbe.org/4z1l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4z1l RCSB], [https://www.ebi.ac.uk/pdbsum/4z1l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4z1l ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PSB6_YEAST PSB6_YEAST] The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Broad-spectrum proteasome inhibitors are applied as anticancer drugs, whereas selective blockage of the immunoproteasome represents a promising therapeutic rationale for autoimmune diseases. We here aimed at identifying minimal structural elements that confer beta5c or beta5i selectivity on proteasome inhibitors. Based on the natural product belactosin C, we synthesized two beta-lactones featuring a dimethoxybenzyl moiety and either a methylpropyl (pseudo-isoleucin) or an isopropyl (pseudo-valine) P1 side chain. Although the two compounds differ only by one methyl group, the isoleucine analogue is six times more potent for beta5i (IC50 =14 nM) than the valine counterpart. Cell culture experiments demonstrate the cell-permeability of the compounds and X-ray crystallography data highlight them as minimal fragments that occupy primed and non-primed pockets of the active sites of the proteasome. Together, these results qualify beta-lactones as a promising lead-structure motif for potent nonpeptidic proteasome inhibitors with diverse pharmaceutical applications.
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Authors: Huber, E.M., Groll, M.
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A Minimal beta-Lactone Fragment for Selective beta5c or beta5i Proteasome Inhibitors.,Groll M, Korotkov VS, Huber EM, de Meijere A, Ludwig A Angew Chem Int Ed Engl. 2015 May 14. doi: 10.1002/anie.201502931. PMID:25973989<ref>PMID:25973989</ref>
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Description: Yeast 20S proteasome in complex with belactosin C derivative 3
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Huber, E.M]]
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<div class="pdbe-citations 4z1l" style="background-color:#fffaf0;"></div>
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[[Category: Groll, M]]
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==See Also==
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*[[Proteasome 3D structures|Proteasome 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Saccharomyces cerevisiae S288C]]
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[[Category: Groll M]]
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[[Category: Huber EM]]

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Yeast 20S proteasome in complex with belactosin C derivative 3

PDB ID 4z1l

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