Sandbox Reserved 1178

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:14, 1 April 2016) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 3: Line 3:
This is a default text for your page '''Blake Moskal/Sandbox1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
This is a default text for your page '''Blake Moskal/Sandbox1'''. Click above on '''edit this page''' to modify. Be careful with the < and > signs.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.
-
=Overview=
+
=Introduction=
-
==Structure==
+
'''Human GPR40 receptor''', hGPR40, is a [https://en.wikipedia.org/wiki/Free_fatty_acid_receptor free fatty-acid receptor] that binds to long chain [https://en.wikipedia.org/wiki/Fatty_acid free fatty acids], inducing [https://en.wikipedia.org/wiki/Insulin insulin] secretion. However, what makes this receptor significant is that the secretion of insulin is [https://en.wikipedia.org/wiki/Glucose glucose] dependent. Thus, there needs to be an [https://en.wikipedia.org/wiki/Agonist agonist] bound, in addition to presence of glucose in the blood in order for insulin secretion to occur. This glucose-dependence makes GPR40 a target for [https://en.wikipedia.org/wiki/Diabetes_mellitus_type_2 type-2 diabetes] because it allows for increased glycemic control and therefore, low risk of [https://en.wikipedia.org/wiki/Hypoglycemia hypoglycemia].
 +
 
 +
=Structure=
[[Image:HGPR40 labeled.png |100 px|left|thumb|Figure Legend]]
[[Image:HGPR40 labeled.png |100 px|left|thumb|Figure Legend]]
===Transmembrane Proteins===
===Transmembrane Proteins===
Line 14: Line 16:
====Disulfide Bond====
====Disulfide Bond====
[[Image:Disulfide_Bond_Ray_Traced.png|100 px|left|thumb|Figure Legend]]
[[Image:Disulfide_Bond_Ray_Traced.png|100 px|left|thumb|Figure Legend]]
-
== Function ==
+
= TAK-875 Binding =
 +
Tak-875 is known to be a [https://en.wikipedia.org/wiki/Partial_agonist partial agonist] of GPR40. The bonding of this ligand to the bonding site is fairly unique, as it is proposed that the ligand must enter through the [https://en.wikipedia.org/wiki/Cell_membrane membrane bilayer]. This is performed via a method similar to ligand binding to sphingosine 1-phosphate receptor 1 [[:3v2w]], retinal loading of opsin [[:4j4q]] and the entry of anandamide in [https://en.wikipedia.org/wiki/Cannabinoid_receptor cannabinoid receptors], in which extracellular loops block the binding from the extracellular matrix (Hanson Et al., 2012). In contrast, delta opioid receptor binding [[:4ej4]] allow for binding directly from the [https://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix]. The binding mechanism through the bilayer may be selectively favoring the free fatty acid because of the [https://en.wikipedia.org/wiki/Chemical_polarity#Nonpolar_molecules non-polar] regions of the ligand.
== Disease ==
== Disease ==

Current revision

GPR40 bound to TAK-875

Caption for this structure

Drag the structure with the mouse to rotate

References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
Personal tools