OBrochtasSandbox
From Proteopedia
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| - | =   | + | ==Anopheles arabiensis Insulin Receptor like Protein==  | 
| - | + | <StructureSection load='Model.itasser.relax.pdb' side='right' caption='Anopheles arabiensis InR kinase domain model' scene='75/750300/Kinase_n_and_c_lobes/1'>  | |
| - | <StructureSection load='Model.itasser.relax.pdb  | + | |
The Anopheles arabiensis Insulin Receptor's kinase domain was modeled by Brian Pierce for the 'An arab ts lethal project'  | The Anopheles arabiensis Insulin Receptor's kinase domain was modeled by Brian Pierce for the 'An arab ts lethal project'  | ||
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This shows the basic structure of the kinase domain with an <scene name='75/750300/Kinase_n_and_c_lobes/1'>N and C lobe</scene>.  The ATP will sit between them just below Beta 1  | This shows the basic structure of the kinase domain with an <scene name='75/750300/Kinase_n_and_c_lobes/1'>N and C lobe</scene>.  The ATP will sit between them just below Beta 1  | ||
| - | <scene name='75/750300/Inr_atp-cat_loop/  | + | <scene name='75/750300/Inr_atp-cat_loop/3'>This</scene> shows the ATP binding site (purple) and the catalytic loop (green).  | 
Here it is as a <scene name='75/750300/Inr_atp-cat_loopspacefill/1'>spacefilled model</scene>.  | Here it is as a <scene name='75/750300/Inr_atp-cat_loopspacefill/1'>spacefilled model</scene>.  | ||
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This <scene name='75/750300/T1221_spacefilled/1'>threonine</scene> when mutated to isoleucine resulted in ts lethal mutations in the sevenless and EGFR-like genes in D. melanogster  | This <scene name='75/750300/T1221_spacefilled/1'>threonine</scene> when mutated to isoleucine resulted in ts lethal mutations in the sevenless and EGFR-like genes in D. melanogster  | ||
| - | Using the software TS_pred (a ts mutation prediction program):  these are the <scene name='75/750300/Geneticmutations-tspred_rosett/  | + | Using the software TS_pred (a ts mutation prediction program):  these are the <scene name='75/750300/Geneticmutations-tspred_rosett/2'>5 best sites</scene> to mutate based on sequence and structure - L1236, I1071, V1196, L1197,I1258 (red)  | 
| - | Using Rosetta_ts_rbf (another ts mutation prediction program):  these are the <scene name='75/750300/Geneticmutations-tspred_rosett/  | + | Using Rosetta_ts_rbf (another ts mutation prediction program):  these are the <scene name='75/750300/Geneticmutations-tspred_rosett/2'>top 5</scene> sites -W1173P, M1075K, Y1208G, L1197P, Y1208Asn (yellow)  | 
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| + | Both TS_pred and Rosetta_ts_rbf had <scene name='75/750300/Tspredrosetta_spacefilled/1'>L1197</scene> in their top 5 (black)  | ||
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| + | Most but not all of the actual and predicted mutations are <scene name='75/750300/Tspred_rosett_burried_residues/1'>buried</scene>.  Note that T1221 and G1000S are not buried.  | ||
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| + | Here are the <scene name='75/750300/Tspred_rosett_hydroph_residues/1'>hydrophobic residues</scene>.  | ||
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| + | </StructureSection>  | ||
Current revision
Anopheles arabiensis Insulin Receptor like Protein
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