Main Page

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:30, 30 September 2025) (edit) (undo)
 
(55 intermediate revisions not shown.)
Line 1: Line 1:
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse: collapse;table-layout: fixed; ">
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse: collapse;table-layout: fixed; ">
-
<tr><td colspan='4' style="background:#F5F5FC;border:1px solid #ddd;">
+
<tr><td colspan='3' style="background:#F5F5FC;border:1px solid #ddd;">
<div style="top:+0.2em; font-size:1.2em; padding:5px 5px 5px 10px; float:right;">'''''ISSN 2310-6301'''''</div>
<div style="top:+0.2em; font-size:1.2em; padding:5px 5px 5px 10px; float:right;">'''''ISSN 2310-6301'''''</div>
-
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.2em;">
+
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.4em;">
-
<b>Because life has more than 2D</b>, Proteopedia helps to understand relationships between structure and function. <b>Proteopedia</b> is a free, collaborative 3D-encyclopedia of proteins & other molecules.</span>
+
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
 +
</span>
 +
 
 +
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.1em;max-width:80%;display:block;">
 +
<b>Proteopedia</b> presents this information in a user-friendly way as a '''collaborative & free 3D-encyclopedia of proteins & other biomolecules.'''
 +
</span>
Line 10: Line 15:
<tr>
<tr>
-
<th style="padding: 10px;background-color: #33ff7b">Selected Pages</th>
+
<th style="padding: 10px;background-color: #33ff7b">Selected Research Pages</th>
-
<th style="padding: 10px;background-color: #dae4d9">Art on Science</th>
+
<th style="padding: 10px;background-color: #f1b840">In Journals</th>
-
<th style="padding: 10px;background-color: #f1b840">Journals</th>
+
<th style="padding: 10px;background-color: #79baff">Education</th>
<th style="padding: 10px;background-color: #79baff">Education</th>
</tr>
</tr>
-
<tr>
+
<tr valign='top'>
<td style="padding: 5px;"> {{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
<td style="padding: 5px;"> {{Proteopedia:Featured SEL/{{#expr: {{#time:U}} mod {{Proteopedia:Number of SEL articles}}}}}}</td>
-
<td style="padding: 5px;">{{Proteopedia:Featured ART/{{#expr: {{#time:U}} mod {{Proteopedia:Number of ART articles}}}}}}</td>
 
<td style="padding: 5px;"> {{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
<td style="padding: 5px;"> {{Proteopedia:Featured JRN/{{#expr: {{#time:U}} mod {{Proteopedia:Number of JRN articles}}}}}}</td>
<td style="padding: 5px;"> {{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
<td style="padding: 5px;"> {{Proteopedia:Featured EDU/{{#expr: {{#time:U}} mod {{Proteopedia:Number of EDU articles}}}}}}</td>
Line 25: Line 28:
<tr style="font-size: 1.2em; text-align: center;">
<tr style="font-size: 1.2em; text-align: center;">
<td style="padding: 10px;background-color: #33ff7b"></td>
<td style="padding: 10px;background-color: #33ff7b"></td>
-
<td style="padding: 10px;background-color: #dae4d9"></td>
 
<td style="padding: 10px;background-color: #f1b840"></td>
<td style="padding: 10px;background-color: #f1b840"></td>
<td style="padding: 10px;background-color: #79baff"></td>
<td style="padding: 10px;background-color: #79baff"></td>
Line 31: Line 33:
-
<tr style="font-size: 1.2em; text-align: center;">
+
<tr style="font-size: 1.0em; text-align: center;">
<td style="padding: 10px;>
<td style="padding: 10px;>
-
<p>[[:Category:Featured in Selected Pages|Other Selected Pages]]</p>
 
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
<p>[[Proteopedia:Video_Guide|Video Guides]]</p>
Line 41: Line 42:
<td style="padding: 10px;>
<td style="padding: 10px;>
-
<p>[[:Category:Featured in Art|Featured in Art]]</p>
+
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
-
<p>[[:Category:PDB Art|All Art on Science]]</p>
+
<p>[[Proteopedia:I3DC|List of I3DCs]]</p>
-
</td>
+
<p>[[How to get an I3DC for your paper]]</p>
-
<td style="padding: 10px;>
 
-
<p>[[:Category:Featured in I3DC|Featured in I3DC]]</p>
 
-
<p>[[How to get an Interactive 3D Complement for your paper]]</p>
 
-
<p>[[Proteopedia:I3DC|List of Interactive Complements]]</p>
 
-
<p>[[I3DC|About Interactive 3D Complements]]</p>
 
</td>
</td>
<td style="padding: 10px;>
<td style="padding: 10px;>
-
<p>[[:Category:Featured in Education|Featured in Education]]</p>
+
<p>[[Teaching strategies using Proteopedia]]</p>
-
<p>[[Teaching Strategies Using Proteopedia]]</p>
+
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of pages for teaching]]</p>
-
<p>[[Teaching_Scenes%2C_Tutorials%2C_and_Educators%27_Pages|Examples of Pages for Teaching]]</p>
+
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
-
<p>[[Help:Contents#For_authors:_contributing_content|How to author pages and contribute to Proteopedia]]</p>
+
</td>
</td>
</tr>
</tr>
-
<tr><td colspan='4' >
+
<tr><td colspan='3' >
<table width='100%' style="padding: 10px; background-color: #d7d8f9; font-size: 1.5em;"><tr>
<table width='100%' style="padding: 10px; background-color: #d7d8f9; font-size: 1.5em;"><tr>
<td>[[Proteopedia:About|About]]</td>
<td>[[Proteopedia:About|About]]</td>
-
<td>{{Template:Contact}}</td>
+
<td>[[Special:Contact|Contact]]</td>
 +
<td>[[Template:MainPageNews|Hot News]]</td>
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
<td>[[Proteopedia:Table of Contents|Table of Contents]]</td>
<td>[[Proteopedia:Structure Index|Structure Index]]</td>
<td>[[Proteopedia:Structure Index|Structure Index]]</td>

Current revision

ISSN 2310-6301

As life is more than 2D, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules

Proteopedia presents this information in a user-friendly way as a collaborative & free 3D-encyclopedia of proteins & other biomolecules.


Selected Research Pages In Journals Education
About this image
HIV-1 protease

by David Canner
The X-ray structure of HIV-1 protease reveals that it is composed of two symmetrically related subunits which form a tunnel where they meet. This is critical because it contains the active site of the protease, consisting on two Asp-Thr-Gly conserved sequences, making it a member of the aspartyl protease family. The two catalytic Asp's either interact with the incoming water or protonate the carbonyl to make the carbon more electrophilic for the incoming water.

>>> Visit this page >>>

About this image
Geobacter nanowire structure surprise.

F Wang, Y Gu, JP O'Brien, SM Yi, SE Yalcin, V Srikanth, C Shen, D Vu, NL Ing, AI Hochbaum, EH Egelman, NS Malvankar. Cell 2019 doi: 10.1016/j.cell.2019.03.029
Bacteria living in anaerobic environments (no oxygen) need alternative electron acceptors in order to get energy from their food. An acceptor abundant in the earth's crust is red iron oxide ("rust"), which gets reduced to black iron oxide (magnetite). Many bacteria, such as Geobacter, get their metabolic energy by transferring electrons to acceptors that are multiple cell diameters distant, using protein nanowires. These were long thought to be pili. But when the structure of the nanowires was solved in 2019, to everyone's surprise, they turned out to be unprecedented linear polymers of multi-heme cytochromes. The hemes form an electrically conductive chain in the cores of these nanowires.

>>> Visit I3DC Interactive Visualizations >>>

About this image
Tutorial: How do we get the oxygen we breathe

J Prilusky, E Hodis doi: 10.14576/431679.1869588
This tutorial is designed for high school and beginning college students. When we breathe oxygen from the air is taken up by blood in our lungs and soon delivered to each of the cells in our body through our circulatory system. Among other uses, our cells use oxygen as the final electron acceptor in a process called aerobic respiration – a process that converts the energy in food and nutrients into a form of energy that the cell can readily use (molecules of ATP, adenosine triphosphate).

>>> Visit this tutorial >>>

How to add content to Proteopedia

Video Guides

Who knows ...

About Interactive 3D Complements - I3DCs

List of I3DCs

How to get an I3DC for your paper

Teaching strategies using Proteopedia

Examples of pages for teaching

How to add content to Proteopedia

About Contact Hot News Table of Contents Structure Index Help

Proteopedia Page Contributors and Editors (what is this?)

Joel L. Sussman, Jaime Prilusky

Personal tools