This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5ymr
From Proteopedia
(Difference between revisions)
| (One intermediate revision not shown.) | |||
| Line 3: | Line 3: | ||
<StructureSection load='5ymr' size='340' side='right'caption='[[5ymr]], [[Resolution|resolution]] 2.40Å' scene=''> | <StructureSection load='5ymr' size='340' side='right'caption='[[5ymr]], [[Resolution|resolution]] 2.40Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5ymr]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YMR OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5ymr]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YMR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YMR FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8X3:2-hydroxyethylsulfonic+acid'>8X3</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8X3:2-hydroxyethylsulfonic+acid'>8X3</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ymr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ymr OCA], [https://pdbe.org/5ymr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ymr RCSB], [https://www.ebi.ac.uk/pdbsum/5ymr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ymr ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/ISLA_DESVH ISLA_DESVH] Involved in an anaerobic respiration pathway that converts the sulfonate isethionate (2-hydroxyethanesulfonate) to ammonia, acetate and sulfide. Catalyzes the radical-mediated C-S bond cleavage of isethionate (2-hydroxyethanesulfonate) to form sulfite and acetaldehyde. Shows no activity with taurine or ethanolamine as substrates.<ref>PMID:30962433</ref> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Desulfovibrio vulgaris str. Hildenborough]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Ang | + | [[Category: Ang E]] |
| - | [[Category: Guo | + | [[Category: Guo C]] |
| - | [[Category: Hu | + | [[Category: Hu Y]] |
| - | [[Category: Hua | + | [[Category: Hua G]] |
| - | [[Category: Lin | + | [[Category: Lin L]] |
| - | [[Category: Wei | + | [[Category: Wei Y]] |
| - | [[Category: Xing | + | [[Category: Xing M]] |
| - | [[Category: Yuchi | + | [[Category: Yuchi Z]] |
| - | [[Category: Zhang | + | [[Category: Zhang J]] |
| - | [[Category: Zhang | + | [[Category: Zhang Y]] |
| - | [[Category: Zhao | + | [[Category: Zhao H]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
The Crystal Structure of IseG
| |||||||||||
Categories: Desulfovibrio vulgaris str. Hildenborough | Large Structures | Ang E | Guo C | Hu Y | Hua G | Lin L | Wei Y | Xing M | Yuchi Z | Zhang J | Zhang Y | Zhao H
