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Nucleoside diphosphate kinase

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Human nucleoside diphosphate kinase complex with ADP, phosphate, TRIS and Ca+2 ion (green) (PDB entry 1ucn)

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References

↑ Janin J, Dumas C, Morera S, Xu Y, Meyer P, Chiadmi M, Cherfils J. Three-dimensional structure of nucleoside diphosphate kinase. J Bioenerg Biomembr. 2000 Jun;32(3):215-25. PMID:11768305
↑ Qiu Y, Zhao D, Butenschon VM, Bauer AT, Schneider SW, Skolnik EY, Hammes HP, Wieland T, Feng Y. Nucleoside diphosphate kinase B deficiency causes a diabetes-like vascular pathology via up-regulation of endothelial angiopoietin-2 in the retina. Acta Diabetol. 2016 Feb;53(1):81-9. doi: 10.1007/s00592-015-0752-x. Epub 2015 Apr, 23. PMID:25900369 doi:http://dx.doi.org/10.1007/s00592-015-0752-x
↑ Chen Y, Gallois-Montbrun S, Schneider B, Veron M, Morera S, Deville-Bonne D, Janin J. Nucleotide binding to nucleoside diphosphate kinases: X-ray structure of human NDPK-A in complex with ADP and comparison to protein kinases. J Mol Biol. 2003 Sep 26;332(4):915-26. PMID:12972261

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman

Retrieved from "http://52.214.119.220/wiki/index.php/Nucleoside_diphosphate_kinase"

Category: Topic Page

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 </StructureSection>
-==3D structures of nucleoside diphosphate kinase==
-Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
-{{#tree:id=OrganizedByTopic|openlevels=0|
-*'''Nucleoside diphosphate kinase'''
-**[[1nsk]], [[1jxv]], [[3l7u]], [[4eno]] - hNDK A – human<BR />
-**[[1ehw]] - hNDK 4 (mutant) <BR />
-**[[3bbc]] - hNDK B (mutant)<br />
-**[[1vya]] – NDK – maize<br />
-**[[1w7w]] - NDK – pea<BR />
-**[[1pku]] - NDK I – rice<BR />
-**[[3b54]] - NDK – yeast<BR />
-**[[1ndk]], [[1npk]], [[1s5z]] – DdNDK – ''Dictyostelium discoideum''<BR />
-**[[1nlk]], [[1nsp]] - DdNDK with phosphohistidine intermediate<BR />
-**[[1leo]], [[1ncl]], [[1hlw]], [[1hhq]], [[1pae]], [[4c6a]] - DdNDK (mutant) <BR />
-**[[2nck]] – MxNDK – ''Myxococcus xanthus''<BR />
-**[[1ndl]], [[3wx8]] – DmNDK – ''Drosophila melanogaster''<BR />
-**[[1nsq]] - DmNDK with phosphohistidine intermediate<BR />
-**[[1k44]], [[4anc]] – MtNDK – ''Mycobacterium tuberculosis''<BR />
-**[[4and]], [[4ane]], [[6qa2]] - MtNDK (mutant)<br />
-**[[1nb2]] - NDK - ''Virgibacillus halodenitrificans''<BR />
-**[[1xiq]] - NDK A – ''Plasmodium falciparum''<BR />
-**[[1u8w]] - AtNDK I –'' Arabidopsis thaliana''<BR />
-**[[1s57]] - AtNDK II<BR />
-**[[1wkj]] - TtNDK – ''Thermus thermophilus''<BR />
-**[[1xqi]] - NDK (mutant) – ''Pyrobaculum aerophilum''<BR />
-**[[2az1]] - HsNDK – ''Halobacterium salinarum''<BR />
-**[[2hur]] - NDK – ''Escherichia coli''<BR />
-**[[2vu5]] - NDK – ''Bacillus anthracis''<BR />
-**[[2zua]] - NDK – ''Haloarcula quadrata''<BR />
-**[[3mpd]] - NDK – ''Encephalitozoon cuniculi''<BR />
-**[[3pj9]] - NDK – ''Campylobacter jejuni''<BR />
-**[[3r9l]] - NDK – ''Giardia lamblia''<BR />
-**[[3ngr]], [[3ngs]] - LmNDK – ''Leishmania major''<BR />
-**[[5c7p]], [[5caa]], [[5cab]] - LmNDK (mutant)<br />
-**[[4kpc]] - NDK – ''Leishmania braziliensis''<br />
-**[[5go1]] - NDK – ''Leishmania amazonensis''<br />
-**[[3prv]] - NDK – ''Trypanosoma cruzi''<BR />
-**[[3q83]] - SaNDK – ''Staphylococcus aureus''<BR />
-**[[4di6]] - BbNDK – ''Borrelia burgdorferi''<BR />
-**[[3ztq]], [[3zto]], [[3ztp]], [[3ztr]], [[3zts]] - NDK – ''Aquifex aeolicus''<BR />
-**[[4dut]] - BtNDK – ''Burkholderia thailandensis''<br />
-**[[2cwk]] - PhNDK – ''Pyrococcus horikoshii''<br />
-**[[3vgs]], [[3vgt]] - HaNDK – ''Halomonas''<br />
-**[[3vgu]], [[3vgv]] - HaNDK (mutant)<br />
-**[[3vvt]] - NDK – reconstructed archaeal ancestral<br />
-**[[3vvu]] - NDK – reconstructed bacterial ancestral<br />
-**[[4f36]] – TbNDK – ''Trypanosoma brucei''<br />
-**[[4s0m]], [[4w98]], [[4wbf]], [[5yih]], [[5yol]] – NDK – ''Acinetobacter baumannii''<br />
-**[[5iol]], [[5iom]] - SmNDK – ''Schisostoma mansoni''<br />
-**[[5u2i]] – NDK – ''Naegleria fowleri''<br />
-**[[5v6d]] – NDK – ''Neisseria gonnorrhoeae''<br />
-**[[5x00]] – NDK – ''Vibrio cholerae''<br />
-**[[6ay1]] – NDK – ''Helicobacter pylori''<br />
-**[[6aes]] – NDK – ''Pseudomonas aeruginosa''<br />
-**[[6agy]] – NDK – ''Aspergillus fumigatus''<br />
-**[[6k3h]] – NDK – ''Aspergillus flavus''<br />
-*NDK complex with adenine derivative
-**[[2hvd]] - hNDK + ADP<BR />
-**[[1ucn]], [[2hve]] - hNDK (mutant) + ADP<BR />
-**[[1zs6]] - hNDK 3 + ADP<BR />
-**[[4uof]], [[4uoh]] - sNDK + ADP derivative – shrimp <br />
-**[[1ndp]], [[1kdn]], [[2bef]] – DdNDK + ADP<BR />
-**[[1b4s]] - DdNDK (mutant) + ADP<BR />
-**[[1bux]], [[1hiy]] - DdNDK + ADP derivative<br />
-**[[1nlk]] - MxNDK + ADP<BR />
-**[[2dxd]] - PhNDK + ATP analog <BR />
-**[[2dy9]], [[2dya]] - PhNDK + ADP<BR />
-**[[3ngt]] - LmNDK + AMP<BR />
-**[[3ngu]] - LmNDK + ADP<BR />
-**[[3q8u]], [[3q8y]] - SaNDK + ADP<BR />
-**[[4dz6]] - BbNDK + ADP<BR />
-**[[1wkl]] - TtNDK + ADP + ATP<br />
-**[[4ek2]] - BtNDK + AMP derivative<br />
-**[[4hr2]] - BtNDK + ADP<br />
-**[[5kk8]] - SmNDK + ADP<br />
-*NDK complex with thymidine derivative
-**[[1f3f]] - DdNDK (mutant) + TDP derivative + TTP derivative<br />
-**[[1lwx]] - DdNDK (mutant) + azido-TDP<BR />
-**[[1f6t]] - DdNDK + TDP derivative<br />
-**[[1mn7]] - DdNDK (mutant) + TTP derivative<br />
-**[[1ndc]] - DdNDK + TDP<BR />
-**[[3ddi]] - ApNDK (mutant) + TDP – ''Acanthamoeba polyphaga''<BR />
-**[[3em1]], [[3evw]], [[3fbc]], [[3fbf]], [[3g2x]], [[3evo]] - ApNDK (mutant) + TDP derivative<br />
-*NDK complex with cytosine derivative
-**[[4uog]] - sNDK + CDP derivative  <br />
-**[[1nhk]] - MxNDK + CMP<BR />
-**[[2az3]] - HsNDK + CDP<BR />
-**[[3ee3]] - ApNDK + CDP<BR />
-**[[3etm]], [[3gpa]], [[3fc9]] - ApNDK (mutant) + CDP<BR />
-**[[3evm]] - ApNDK (mutant) + CDP derivative<br />
-**[[3q89]] - SaNDK + CDP<BR />
-**[[4fkx]] - TbNDK + CDP<br />
-*NDK complex with guanine derivative
-**[[1nue]] , [[3bbf]] - hNDK + GDP<BR />
-**[[3bbb]] - hNDK B + GMP derivative + AMP derivative<br />
-**[[1wkk]] - TtNDK + GDP<BR />
-**[[2dxe]] - PhNDK + GDP<BR />
-**[[2dxf]] - PhNDK + GTP analog<BR />
-**[[3gp9]] - ApNDK + GDP<BR />
-**[[3b6b]] - ApNDK + GDP derivative<br />
-**[[3fbe]], [[3dkd]], [[3ejm]] - ApNDK (mutant) + GDP<BR />
-**[[3emt]], [[3ena]] - ApNDK (mutant) + GDP derivative<br />
-**[[3q86]] - SaNDK + GTP<br />
-**[[4fky]] - TbNDK + GTP<br />
-**[[1s59]] - AtNDK + GDP derivative + GTP derivative<br />
-*NDK complex with uridine derivative
-**[[1b99]] - DdNDK + UDP derivative<br />
-**[[3eic]] - ApNDK + UDP<BR />
-**[[3elh]] - ApNDK + UDP derivative<br />
-**[[3fbb]], [[3fcv]] - ApNDK (mutant) + UDP derivative<br />
-**[[3fcw]] - ApNDK (mutant) + UDP<BR />
-**[[3q8v]] - SaNDK + UDP<BR />
-**[[4f4a]] - TbNDK + UDP<br />
-*NDK other complexes
-**[[5ui4]] - hNDK + imidazole derivative<br />
-**[[1mn9]], [[3fkb]] - DdNDK (mutant) + antiviral drug<br />
-**[[4cp5]] - DdNDK (mutant) + PMPAPP<br />
-}}
 == References ==
 <references/>
 [[Category:Topic Page]]

Nucleoside diphosphate kinase

From Proteopedia

Current revision

Contents

Function

Disease

Structural highlights

3D structures of nucleoside diphosphate kinase

References

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