6m5v
From Proteopedia
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(New page: '''Unreleased structure''' The entry 6m5v is ON HOLD Authors: Description: Category: Unreleased Structures) |
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| - | '''Unreleased structure''' | ||
| - | The | + | ==The coordinate of the hexameric terminase complex in the presence of the ADP-BeF3== |
| + | <StructureSection load='6m5v' size='340' side='right'caption='[[6m5v]], [[Resolution|resolution]] 4.50Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6m5v]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_alphaherpesvirus_1_strain_17 Human alphaherpesvirus 1 strain 17]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M5V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M5V FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.5Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=BEF:BERYLLIUM+TRIFLUORIDE+ION'>BEF</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m5v OCA], [https://pdbe.org/6m5v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m5v RCSB], [https://www.ebi.ac.uk/pdbsum/6m5v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m5v ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/TRM1_HHV11 TRM1_HHV11] Component of the molecular motor that translocates viral genomic DNA in empty capsid during DNA packaging. Forms a tripartite terminase complex together with TRM2 and TRM3 in the host cytoplasm. Once the complex reaches the host nucleus, it interacts with the capsid portal vertex. This portal forms a ring in which genomic DNA is translocated into the capsid. TRM1 carries an endonuclease activity that plays an important role for the cleavage of concatemeric viral DNA into unit length genomes.[HAMAP-Rule:MF_04014]<ref>PMID:16920825</ref> <ref>PMID:9878624</ref> | ||
| - | + | ==See Also== | |
| - | + | *[[Terminase 3D Structures|Terminase 3D Structures]] | |
| - | + | == References == | |
| - | [[Category: | + | <references/> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Human alphaherpesvirus 1 strain 17]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Chen ZH]] | ||
| + | [[Category: Rao ZH]] | ||
| + | [[Category: Wang N]] | ||
| + | [[Category: Wang XX]] | ||
| + | [[Category: Yang P]] | ||
| + | [[Category: Yang YX]] | ||
| + | [[Category: Zhou ZH]] | ||
Current revision
The coordinate of the hexameric terminase complex in the presence of the ADP-BeF3
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