Template:STRUCTURE 1m1j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1m1j, resolution 2.70&Aring; (<scene name='initialview01'>initial scene</scene>) |SITE= |LIGAND= <scene name='pdbligand=CA:...)
Current revision (18:52, 26 July 2012) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
{{Structure
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1m1j, resolution 2.70&Aring; (<scene name='initialview01'>initial scene</scene>)
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1m1j]], [[Resolution|resolution]] 2.70&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-
|SITE=
+
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>
|LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>
-
|ACTIVITY=
 
-
|GENE=
 
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08702 Fib_alpha], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09389 Fib_beta], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09395 Fib_gamma], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00087 FReD], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00001 7tm_1]</span>
 
|RELATEDENTRY=[[1ei3|1ei3]], [[1fzc|1fzc]]
|RELATEDENTRY=[[1ei3|1ei3]], [[1fzc|1fzc]]
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1m1j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m1j OCA], [http://www.ebi.ac.uk/pdbsum/1m1j PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1m1j RCSB]</span>
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1m1j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m1j OCA], [http://www.ebi.ac.uk/pdbsum/1m1j PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1m1j RCSB]</span>
 +
|FUNCTION={{GO|id=GO:0030674 | text = protein binding, bridging}}{{GO|id=GO:0005102 | text = receptor binding}}
 +
|PROCESS={{GO|id=GO:0007165 | text = signal transduction}}{{GO|id=GO:0007596 | text = blood coagulation}}{{GO|id=GO:0030168 | text = platelet activation}}{{GO|id=GO:0051258 | text = protein polymerization}}
 +
|COMPONENT={{GO|id=GO:0005577 | text = fibrinogen complex}}
 +
|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jA00 1M1Ja00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jB02 1M1Jb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jB01 1M1Jb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jB03 1M1Jb03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jC01 1M1Jc01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jC02 1M1Jc02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jC03 1M1Jc03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jD00 1M1Jd00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jE01 1M1Je01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jE03 1M1Je03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jE02 1M1Je02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jF01 1M1Jf01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jF02 1M1Jf02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jF03 1M1Jf03]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012290 Ipr012290], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014716 Ipr014716], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014814 Ipr014814], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002181 Ipr002181], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014715 Ipr014715]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF08702 PF08702], [http://pfam.sanger.ac.uk/family?acc=PF00147 PF00147]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=74369 d1m1ja_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=74377 d1m1jf1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=74378 d1m1jf2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P14448 P14448], [http://ca.expasy.org/cgi-bin/niceprot.pl?Q02020 Q02020], [http://ca.expasy.org/cgi-bin/niceprot.pl?O93568 O93568]</span>
 +
|uPDB=1M1J|CONSURF={{!}}-
 +
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
 +
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
 +
{{!}} '''Toggle Conservation Colors:'''
 +
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1m1j_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>D [x]</text>
 +
<name>jmb_1m1j_D</name>
 +
<title>toggle chain D</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>B [x]</text>
 +
<name>jmb_1m1j_B</name>
 +
<title>toggle chain B</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>E [x]</text>
 +
<name>jmb_1m1j_E</name>
 +
<title>toggle chain E</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>C [x]</text>
 +
<name>jmb_1m1j_C</name>
 +
<title>toggle chain C</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>F [x]</text>
 +
<name>jmb_1m1j_F</name>
 +
<title>toggle chain F</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>G [x]</text>
 +
<name>jmb_1m1j_G</name>
 +
<title>toggle chain G</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>H [x]</text>
 +
<name>jmb_1m1j_H</name>
 +
<title>toggle chain H</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>I [x]</text>
 +
<name>jmb_1m1j_I</name>
 +
<title>toggle chain I</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>J [x]</text>
 +
<name>jmb_1m1j_J</name>
 +
<title>toggle chain J</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
}}
}}

Current revision

Drag the structure with the mouse to rotate
1m1j, resolution 2.70Å ()
Ligands: , ,
Related: 1ei3, 1fzc
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1m1j"
Personal tools