We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

Sandbox Home

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: <table id="tableColumnsMainPage" style="width:100%; border:2px solid #ddd; border-collapse:collapse; table-layout:fixed;"> <tr> <td colspan="3" style="background:#F5F5FC; border:1px ...)
Current revision (16:37, 30 September 2025) (edit) (undo)
 
(18 intermediate revisions not shown.)
Line 1: Line 1:
-
<table id="tableColumnsMainPage" style="width:100%; border:2px solid #ddd; border-collapse:collapse; table-layout:fixed;">
+
<!-- Flexbox wrapper for logo and introductory text -->
 +
<div style="display: flex; align-items: flex-start; margin-bottom: 1em;">
 +
<div style="margin-right: 20px;">
 +
<!-- Proteopedia Logo image/tag, e.g.: -->
 +
<img src="ProteopediaLogo.png" alt="Proteopedia logo" style="height:80px;">
 +
</div>
 +
<div>
 +
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.4em;">
 +
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
 +
</span>
 +
<br>
 +
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style: italic; font-size: 1.1em; max-width:80%; display:block;">
 +
<b>Proteopedia</b> presents this information in a user-friendly way as a '''collaborative & free 3D-encyclopedia of proteins & other biomolecules.'''
 +
</span>
 +
</div>
 +
</div>
 +
 
 +
<table id="tableColumnsMainPage" style="width:100%;border:2px solid #ddd;border-collapse:collapse;table-layout:fixed;">
<tr>
<tr>
-
<td colspan="3" style="background:#F5F5FC; border:1px solid #ddd;">
+
<td colspan="3" style="background:#F5F5FC;border:1px solid #ddd;vertical-align:top;">
-
<div style="position:relative; top:0.2em; font-size:1.2em; padding:5px 5px 5px 10px; float:right;"><b><i>ISSN 2310-6301</i></b></div>
+
<div style="top:.2em;font-size:1.2em;padding:5px 5px 5px 10px;float:right;">
-
 
+
'''''ISSN 2310-6301'''''
-
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style:italic; font-size:1.4em;">
+
</div>
-
<b>As life is more than 2D</b>, Proteopedia helps to bridge the gap between 3D structure &amp; function of biomacromolecules
+
-
</span>
+
-
 
+
-
<span style="border:none; margin:0; padding:0.3em; color:#000; font-style:italic; font-size:1.1em; max-width:80%; display:block;">
+
-
<b>Proteopedia</b> presents this information in a user-friendly way as a <b>collaborative &amp; free 3D-encyclopedia of proteins &amp; other biomolecules.</b>
+
-
</span>
+
</td>
</td>
</tr>
</tr>
Line 26: Line 37:
</tr>
</tr>
-
<tr style="font-size:1.2em; text-align:center;">
+
<tr style="font-size:1.2em;text-align:center;">
<td style="padding:10px; background-color:#33ff7b;"></td>
<td style="padding:10px; background-color:#33ff7b;"></td>
<td style="padding:10px; background-color:#f1b840;"></td>
<td style="padding:10px; background-color:#f1b840;"></td>
Line 32: Line 43:
</tr>
</tr>
-
<tr style="font-size:1.0em; text-align:center;">
+
<tr style="font-size:1em;text-align:center;">
<td style="padding:10px;">
<td style="padding:10px;">
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
<p>[[Help:Contents#For_authors:_contributing_content|How to add content to Proteopedia]]</p>
Line 38: Line 49:
<p>[[Who knows]] ...</p>
<p>[[Who knows]] ...</p>
</td>
</td>
- 
<td style="padding:10px;">
<td style="padding:10px;">
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
<p>[[I3DC|About Interactive 3D Complements - '''I3DCs''']]</p>
Line 44: Line 54:
<p>[[How to get an I3DC for your paper]]</p>
<p>[[How to get an I3DC for your paper]]</p>
</td>
</td>
- 
<td style="padding:10px;">
<td style="padding:10px;">
<p>[[Teaching strategies using Proteopedia]]</p>
<p>[[Teaching strategies using Proteopedia]]</p>

Current revision

   <img src="ProteopediaLogo.png" alt="Proteopedia logo" style="height:80px;">
   
     As life is more than 2D, Proteopedia helps to bridge the gap between 3D structure & function of biomacromolecules
   
   
Proteopedia presents this information in a user-friendly way as a collaborative & free 3D-encyclopedia of proteins & other biomolecules.
       ISSN 2310-6301
Selected Research Pages In Journals Education
About this image
The ribosome

by Wayne Decatur
The 2009 Nobel Prize in Chemistry was awarded for studies of the ribosome. The ribosome is the machine in your cells that accurately and efficiently decodes the genetic information stored in your genome and synthesizes the corresponding polypeptide chain one amino acid at a time in the process of translation. These structures are considered landmarks for the fact they showed clearly the major contributions to decoding and peptide bond synthesis come from RNA and not protein, as well as for the sheer size of the structures determined.

>>> Visit this page >>>

About this image
Geobacter pili: surprising function.

Y Gu, V Srikanth, AI Salazar-Morales, R Jain, JP O'Brien, SM Yi, RK Soni, FA Samatey, SE Yalcin, NS Malvankar. Nature 2021 doi: 10.1038/s41586-021-03857-w
Geobacter pili were long thought to be electrically conductive protein nanowires composed of PilA-N. Nanowires are crucial to the energy metabolism of bacteria flourishing in oxygen-deprived environments. To everyone's surprise, in 2019, the long-studied nanowires were found to be linear polymers of multi-heme cytochromes, not pili. The first cryo-EM structure of pili (2021) reveals a filament made of dimers of PilA-N and PilA-C, shown. Electrical conductivity of pili is much lower than that of cytochrome nanowires. Evidence suggests that PilA-NC filaments are periplasmic pseudopili crucial for exporting cytochrome nanowires onto the cell surface, rather than the pili serving as nanowires themselves.

>>> Visit I3DC Interactive Visualizations >>>

About this image
Virus Capsid Geometry

The Capsid of a virus is its outer shell or "skin". Viruses have evolved intricate and elegant ways to assemble capsid protein chains into complete, usually spherical capsids, often with icosahedral symmetry. Pictured is an extremely simplified model of a capsid, where a single enlarged atom represents each of the 360 protein chains in the capsid of the Simian Virus 40 (SV40), a member of a group of cancer-causing viruses that has been extensively researched for decades.

>>> See more animations and explanation >>>

How to add content to Proteopedia

Video Guides

Who knows ...

About Interactive 3D Complements - I3DCs

List of I3DCs

How to get an I3DC for your paper

Teaching strategies using Proteopedia

Examples of pages for teaching

How to add content to Proteopedia

About Contact Hot News Table of Contents Structure Index Help
Personal tools