1rfy

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{{Seed}}
 
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[[Image:1rfy.png|left|200px]]
 
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==Crystal Structure of Quorum-Sensing Antiactivator TraM==
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The line below this paragraph, containing "STRUCTURE_1rfy", creates the "Structure Box" on the page.
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<StructureSection load='1rfy' size='340' side='right'caption='[[1rfy]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1rfy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RFY FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rfy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfy OCA], [https://pdbe.org/1rfy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rfy RCSB], [https://www.ebi.ac.uk/pdbsum/1rfy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rfy ProSAT]</span></td></tr>
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{{STRUCTURE_1rfy| PDB=1rfy | SCENE= }}
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</table>
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== Function ==
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===Crystal Structure of Quorum-Sensing Antiactivator TraM===
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[https://www.uniprot.org/uniprot/TRAM_RHIRD TRAM_RHIRD] Negatively regulates conjugation and the expression of tra genes by antagonizing TraR/AAI-dependent activation. TraM may either bind or modify TraR or AAI making them unavailable. Alternatively, TraM may bind tra promoters preventing TraR activation.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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The line below this paragraph, {{ABSTRACT_PUBMED_15186414}}, adds the Publication Abstract to the page
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<jmolCheckbox>
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(as it appears on PubMed at http://www.pubmed.gov), where 15186414 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/1rfy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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{{ABSTRACT_PUBMED_15186414}}
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rfy ConSurf].
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1RFY is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFY OCA].
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<div style="clear:both"></div>
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__TOC__
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==Reference==
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</StructureSection>
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<ref group="xtra">PMID:15186414</ref><references group="xtra"/>
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[[Category: Agrobacterium tumefaciens]]
[[Category: Agrobacterium tumefaciens]]
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[[Category: Cha, M R.]]
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[[Category: Large Structures]]
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[[Category: Chen, G.]]
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[[Category: Cha MR]]
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[[Category: Chen, L.]]
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[[Category: Chen G]]
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[[Category: Fuqua, C.]]
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[[Category: Chen L]]
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[[Category: Malenkos, J W.]]
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[[Category: Fuqua C]]
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[[Category: Homodimer]]
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[[Category: Malenkos JW]]
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[[Category: Inter- and intra-molcular two-helix coiled coil]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 13:51:11 2009''
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Current revision

Crystal Structure of Quorum-Sensing Antiactivator TraM

PDB ID 1rfy

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