User:Gilad Parann-Nissany/Sandbox 1
From Proteopedia
< User:Gilad Parann-Nissany(Difference between revisions)
(New page: A first attempt to create a Proteopedia page. I am going to try for some 3D DNA stuff. Let's see if I succeed. <applet load='2QG6' size='300' frame='true' align='right' caption='Human Nic...) |
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| - | A first attempt to create a Proteopedia page. I am going to try for some 3D | + | A first attempt to create a Proteopedia page. I am going to try for some 3D protein stuff. Let's see if I succeed. |
| - | <applet load='2QG6' size='300' frame='true' align='right' caption='Human Nicotine-related protein with an unusual name - Riboside Kinase (Nrk1)' /> | + | <applet load='2QG6' size='300' frame='true' align='right' caption='Human Nicotine-related protein with an unusual name - Nicotinamide Riboside Kinase (Nrk1; PDB: 2QG6) - in complex with Nicotinamide Mononucleotide (Nmn)' /> |
| + | So we start with <scene name='User:Gilad_Parann-Nissany/Sandbox_1/The_basic_nrk1/1'>Nicotinamide Riboside Kinase</scene>. | ||
| + | (Last time I smoked a cigar was at my brother's wedding) | ||
| - | + | <scene name='User:Gilad_Parann-Nissany/Sandbox_1/Measured_distance_1/1'>This is a distance</scene> between two Oxygen atoms on our Riboside. | |
| - | + | Now here are some yellow <scene name='User:Gilad_Parann-Nissany/Sandbox_1/Frothy_residue_1/2'>frothy</scene> residues. | |
| - | + | Now we move on to the next step of this advanced research. The protein must have some <scene name='User:Gilad_Parann-Nissany/Sandbox_1/Potential_binding_sites_1/1'>binding sites</scene>. Right? Right! The ProMate tool allows us to identify these immediately. | |
| + | |||
| + | Now lets try for some <scene name='User:Gilad_Parann-Nissany/Sandbox_1/The_basic_nrk1/2'>evolutionary conservation</scene> levels: you will notice that the sections that attach to the nucleotide are more strongly conserved (more purple). | ||
Current revision
A first attempt to create a Proteopedia page. I am going to try for some 3D protein stuff. Let's see if I succeed.
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So we start with . (Last time I smoked a cigar was at my brother's wedding)
between two Oxygen atoms on our Riboside.
Now here are some yellow residues.
Now we move on to the next step of this advanced research. The protein must have some . Right? Right! The ProMate tool allows us to identify these immediately.
Now lets try for some levels: you will notice that the sections that attach to the nucleotide are more strongly conserved (more purple).
