User:Eran Hodis/P2J
From Proteopedia
(Difference between revisions)
(→Issues we are working to solve) |
(→Issues we are working to solve) |
||
| Line 9: | Line 9: | ||
# Slab & depth are not translated (6.pse) | # Slab & depth are not translated (6.pse) | ||
# Waters shown as crosses are translated to spheres (6.pse) -- May be a Jmol limitation. Could make spheres smaller at least. | # Waters shown as crosses are translated to spheres (6.pse) -- May be a Jmol limitation. Could make spheres smaller at least. | ||
| + | # Translation of translucency is sometimes too opaque (9.pse) | ||
===Issues we accept for the time being=== | ===Issues we accept for the time being=== | ||
Revision as of 19:47, 18 April 2010
The PyMOL2Jmol Translator fails to translate certain features:
Contents |
Issues we are working to solve
- Zoom does not translate.
- Wireframe thickness appears too thin (0.pse, 6.pse)
- A surface over 2 chains appears broken (2.pse)
- Fidelity of surface coloring (3.pse)
- Fidelity of wireframe coloring (4.pse)
- Slab & depth are not translated (6.pse)
- Waters shown as crosses are translated to spheres (6.pse) -- May be a Jmol limitation. Could make spheres smaller at least.
- Translation of translucency is sometimes too opaque (9.pse)
Issues we accept for the time being
- Inability to translate movies.
Issues due to Jmol
These issues are only solvable through changes to Jmol
- Dotted measurements in Jmol have a set width that can look narrow compared to measurement objects in PyMOL.
Issues due to PyMOL
These issues are only solvable through changes to PyMOL
