User:Eran Hodis/P2J
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(Difference between revisions)
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===Issues we are working to solve=== | ===Issues we are working to solve=== | ||
# Zoom does not translate. | # Zoom does not translate. | ||
| - | # Wireframe thickness appears too thin (0.pse, 6.pse) | + | # Wireframe thickness appears too thin (0.pse, 6.pse, 11.pse) |
# A surface over 2 chains appears broken (2.pse) | # A surface over 2 chains appears broken (2.pse) | ||
# Fidelity of surface coloring (3.pse) | # Fidelity of surface coloring (3.pse) | ||
# Fidelity of wireframe coloring (4.pse) | # Fidelity of wireframe coloring (4.pse) | ||
# Slab & depth are not translated (6.pse) | # Slab & depth are not translated (6.pse) | ||
| - | # Waters shown as crosses are translated to spheres (6.pse) -- May be a Jmol limitation. Could make spheres smaller at least. | + | # Waters shown as crosses are translated to spheres (6.pse) -- May be a Jmol limitation. Could make spheres smaller at least. (but they look good here 11.pse) |
# Translation of translucency is sometimes too opaque (9.pse) | # Translation of translucency is sometimes too opaque (9.pse) | ||
| + | ## But here translucent surface looks good (11.pse) | ||
===Issues we accept for the time being=== | ===Issues we accept for the time being=== | ||
Revision as of 19:58, 18 April 2010
The PyMOL2Jmol Translator fails to translate certain features:
Contents |
Issues we are working to solve
- Zoom does not translate.
- Wireframe thickness appears too thin (0.pse, 6.pse, 11.pse)
- A surface over 2 chains appears broken (2.pse)
- Fidelity of surface coloring (3.pse)
- Fidelity of wireframe coloring (4.pse)
- Slab & depth are not translated (6.pse)
- Waters shown as crosses are translated to spheres (6.pse) -- May be a Jmol limitation. Could make spheres smaller at least. (but they look good here 11.pse)
- Translation of translucency is sometimes too opaque (9.pse)
- But here translucent surface looks good (11.pse)
Issues we accept for the time being
- Inability to translate movies.
Issues due to Jmol
These issues are only solvable through changes to Jmol
- Dotted measurements in Jmol have a set width that can look narrow compared to measurement objects in PyMOL.
Issues due to PyMOL
These issues are only solvable through changes to PyMOL
