Sandbox7 Eric Martz
From Proteopedia
(Difference between revisions)
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Proposed title: <span style="font-size:150%">Temperature vs. Resolution</span> | Proposed title: <span style="font-size:150%">Temperature vs. Resolution</span> | ||
| + | |||
| + | ==1.4 Ångstroms [[Resolution]]== | ||
| + | <div style="float:left"> | ||
| + | <center> | ||
| + | <span style="font-size:125%;">[[Resolution]] 2.0 Ångstroms</span><br> | ||
| + | Min/Av/Max: [[Temperature values]]. Examples selected for low or high R/Rfree. | ||
| + | </center> | ||
| + | {| class="wikitable sortable" | ||
| + | |- | ||
| + | ! [[PDB ID]] !! Deposition !! [[R value|R]] !! [[Free R|R free]] !! Min !! Av !! Max !! Notes | ||
| + | |- | ||
| + | | [[]] || || 0. || 0. || || || || | ||
| + | |} | ||
| + | <nowiki>*</nowiki>SG: Structural Genomics. | ||
| + | </div> | ||
| + | <div style="float:right;margin-top:70px;" > | ||
| + | {| class="wikitable" | ||
| + | |+ Temperature values<br>for [[resolution]] 1.4 Å | ||
| + | |- | ||
| + | ! Column !! Range*** !! Average***<br>N=7 | ||
| + | |- | ||
| + | | Min || 2-26 || | ||
| + | |- | ||
| + | | Av || 12-45 || | ||
| + | |- | ||
| + | | Max || 59-78 || | ||
| + | |} | ||
| + | <nowiki>***</nowiki>Excludes outliers. | ||
| + | </div> | ||
| + | |||
| + | ==2.0 Ångstroms [[Resolution]]== | ||
| + | 2.1 Ångstroms is the median [[resolution]] in the [[Protein Data Bank]]. | ||
<div style="float:left"> | <div style="float:left"> | ||
Revision as of 19:57, 27 June 2011
Please do not edit this page. Thank you, User:Eric Martz, June 2011.
Proposed title: Temperature vs. Resolution
1.4 Ångstroms Resolution
Resolution 2.0 Ångstroms
Min/Av/Max: Temperature values. Examples selected for low or high R/Rfree.
| PDB ID | Deposition | R | R free | Min | Av | Max | Notes |
|---|---|---|---|---|---|---|---|
| [[]] | 0. | 0. |
*SG: Structural Genomics.
| Column | Range*** | Average*** N=7 |
|---|---|---|
| Min | 2-26 | |
| Av | 12-45 | |
| Max | 59-78 |
***Excludes outliers.
2.0 Ångstroms Resolution
2.1 Ångstroms is the median resolution in the Protein Data Bank.
Resolution 2.0 Ångstroms
Min/Av/Max: Temperature values. Examples selected for low or high R/Rfree.
| PDB ID | Deposition | R | R free | Min | Av | Max | Notes |
|---|---|---|---|---|---|---|---|
| 3nt6 | 2010 | 0.124 | 0.155 | 2 | 36 | 78 | |
| 1tbt | 2004 | 0.130 | 0.184 | 7 | 21 | 59 | |
| 1qno | 1999 | 0.126 | 0.200 | 2 | 12 | 72 | |
| 1vra | 2005 | 0.141 | 0.158 | 11 | 30 | 64 | SG* |
| 1yze | 2005 | 0.325 | 0.367 | 22 | 22 | 22 | Outlier |
| 1m3y | 2002 | 0.342 | 0.352 | 16 | 34 | 67 | |
| 3d0m | 2008 | 0.295 | 0.361 | 30 | 62 | 130 | RNA, Outlier |
| 2w2v | 2008 | 0.283 | 0.345 | 17 | 29 | 59 | |
| 3dvv | 2008 | 0.268 | 0.277 | 26 | 45 | 66 | RNA |
*SG: Structural Genomics.
| Column | Range*** | Average*** N=7 |
|---|---|---|
| Min | 2-26 | 11.6 |
| Av | 12-45 | 29.6 |
| Max | 59-78 | 66.4 |
***Excludes outliers.
Methods
At Temperature color schemes is a Jmol script that reports the min/av/max temperature values in a PDB file.
