Enolase multiple sequence alignment
From Proteopedia
Line 5: | Line 5: | ||
+ | <p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | ||
+ | mso-bidi-font-family:"Courier New"'> 1 ENO_DROME| | ||
+ | Drosophila melanogaster --------mt IkaIkA<b>R</b>qIy <b>DSRGNPTVE</b>v | ||
+ | DLtt-elglf rAav<b>PSGAST</b> 41<br> | ||
+ | 2 ENOA_HUMAN| | ||
+ | Homo sapiens ---------s IlkIhA<b>R</b>eIf <b>DSRGNPTVE</b>v DLft-skglf | ||
+ | rAav<b>PSGAST</b> 40<br> | ||
+ | 3 ENO_METJA| Methanococcus janaschii | ||
+ | mlynmderfe IkdIvA<b>R</b>eVi <b>DSRGNPTVE</b>v EVitkgngyg sAiv<b>PSGAST</b> | ||
+ | 50<br> | ||
+ | 4 ENO_ECOLI| | ||
+ | Escherichia coli --------sk IvkIiG<b>R</b>eIi <b>DSRGNPTVE</b>a | ||
+ | EVhleggfvg mAaa<b>PSGAST</b> 42<br> | ||
+ | 5 ENO_BACSU| | ||
+ | Bacillus subtilis -------mpy IvdVyA<b>R</b>eVl <b>DSRGNPTVE</b>v | ||
+ | EVytetgafg rAlv<b>PSGAST</b> 43<br> | ||
+ | 6 4ENL Yeast| Saccharomyces cerevisiae ---------a VskVyA<b>R</b>sVy | ||
+ | <b>DSRGNPTVE</b>v ELtt-ekgvf rSiv<b>PSGAST</b> 40<o:p></o:p></span></p> | ||
+ | |||
+ | <p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | ||
+ | mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | ||
+ | yes"> </span><span | ||
+ | style="mso-spacerun: | ||
+ | yes"> </span>.<span | ||
+ | style="mso-spacerun: yes"> </span>. .* .<span style="mso-spacerun: | ||
+ | yes"> </span>*********<span style="mso-spacerun: yes"> | ||
+ | </span>..<span style="mso-spacerun: yes"> | ||
+ | </span>.<span style="mso-spacerun: yes"> </span>******<br> | ||
+ | <br> | ||
1 ENO_DROME| Drosophila melanogaster <b>G</b>vh<b>EA</b>L<b>E</b>l<b>RD</b> | 1 ENO_DROME| Drosophila melanogaster <b>G</b>vh<b>EA</b>L<b>E</b>l<b>RD</b> | ||
nD<b>K</b>anYh<b>GK</b>S <b>V</b>lk<b>AV</b>ghV<b>N</b>d tLgpelIkan ldvvd<b>Q</b>asI<b>D</b> | nD<b>K</b>anYh<b>GK</b>S <b>V</b>lk<b>AV</b>ghV<b>N</b>d tLgpelIkan ldvvd<b>Q</b>asI<b>D</b> | ||
Line 142: | Line 171: | ||
<span style="mso-spacerun: | <span style="mso-spacerun: | ||
yes"> | yes"> | ||
- | </span>01: | + | </span>01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)~<br> |
1 ENO_DROME| Drosophila melanogaster gkIeiGm<b>D</b>v<b>A</b> | 1 ENO_DROME| Drosophila melanogaster gkIeiGm<b>D</b>v<b>A</b> | ||
A<b>SEF</b>Yk--d<b>G</b> q<b>Y</b>dLdfknek sdksqwlpad klanlykefi 285<br> | A<b>SEF</b>Yk--d<b>G</b> q<b>Y</b>dLdfknek sdksqwlpad klanlykefi 285<br> | ||
Line 171: | Line 200: | ||
<span style="mso-spacerun: | <span style="mso-spacerun: | ||
yes"> | yes"> | ||
- | </span>01: | + | </span>01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)~<br> |
1 ENO_DROME| Drosophila melanogaster kdF<b>P</b>IV<b>SIED</b> | 1 ENO_DROME| Drosophila melanogaster kdF<b>P</b>IV<b>SIED</b> | ||
pfdqdhWeAw snltgctd-- I<b>Q</b>I<b>V</b>G<b>DDL</b>t<b>V</b> <b>TN</b>pkrIatAV | pfdqdhWeAw snltgctd-- I<b>Q</b>I<b>V</b>G<b>DDL</b>t<b>V</b> <b>TN</b>pkrIatAV | ||
Line 189: | Line 218: | ||
6 4ENL Yeast| Saccharomyces cerevisiae krY<b>P</b>IV<b>SIED</b> | 6 4ENL Yeast| Saccharomyces cerevisiae krY<b>P</b>IV<b>SIED</b> | ||
pfaeddWeAw shffktag-- I<b>Q</b>I<b>V</b>A<b>DDL</b>t<b>V</b> <b>TN</b>pkrIatAI | pfaeddWeAw shffktag-- I<b>Q</b>I<b>V</b>A<b>DDL</b>t<b>V</b> <b>TN</b>pkrIatAI | ||
- | 334 | + | 334<o:p></o:p></span></p> |
+ | |||
+ | <p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | ||
+ | mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | ||
+ | yes"> | ||
+ | </span><span style="mso-spacerun: | ||
+ | yes"> </span>.*..****<span | ||
+ | style="mso-spacerun: yes"> </span>. .<span | ||
+ | style="mso-spacerun: | ||
+ | yes"> | ||
+ | </span>.*.*.*** * **<span style="mso-spacerun: yes"> </span>.<span | ||
+ | style="mso-spacerun: yes"> </span>..<br> | ||
+ | <br> | ||
+ | 1 ENO_DROME| Drosophila melanogaster | ||
+ | ekkacncL<b>L</b>L <b>K</b>v<b>NQIG</b>tVt<b>E</b> sia<b>A</b>hllAkk n<b>G</b>WgtmV<b>SHR</b> | ||
+ | <b>SGETED</b>sf<b>I</b>G 383<br> | ||
+ | 2 ENOA_HUMAN| | ||
+ | Homo sapiens nekscncL<b>L</b>L <b>K</b>v<b>NQIG</b>sVt<b>E</b> slq<b>A</b>cklAqa | ||
+ | n<b>G</b>WgvmV<b>SHR</b> <b>SGETED</b>tf<b>I</b>A 381<br> | ||
+ | 3 ENO_METJA| Methanococcus janaschii | ||
+ | emkaanaL<b>L</b>L <b>K</b>v<b>NQIG</b>tLs<b>E</b> avd<b>A</b>aqlAfr n<b>G</b>YgvvV<b>SHR</b> | ||
+ | <b>SGETED</b>tt<b>I</b>A 378<br> | ||
+ | 4 ENO_ECOLI| | ||
+ | Escherichia coli ekgiansI<b>L</b>I <b>K</b>f<b>NQIG</b>sLt<b>E</b> tla<b>A</b>ikmAkd | ||
+ | a<b>G</b>YtavI<b>SHR</b> <b>SGETED</b>at<b>I</b>A 380<br> | ||
+ | 5 ENO_BACSU| | ||
+ | Bacillus subtilis kngvgnsI<b>L</b>I <b>K</b>v<b>NQIG</b>tLt<b>E</b> tfd<b>A</b>iemAkr | ||
+ | a<b>G</b>YtavI<b>SHR</b> <b>SGETED</b>st<b>I</b>A 378<br> | ||
+ | 6 4ENL Yeast| Saccharomyces cerevisiae ekkaadaL<b>L</b>L | ||
+ | <b>K</b>v<b>NQIG</b>tLs<b>E</b> sik<b>A</b>aqdSfa a<b>G</b>WgvmV<b>SHR</b> <b>SGETED</b>tf<b>I</b>A | ||
+ | 384<o:p></o:p></span></p> | ||
+ | |||
+ | <p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | ||
+ | mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | ||
+ | yes"> | ||
+ | </span>.*. . **** . *<span style="mso-spacerun: yes"> | ||
+ | </span>*<span style="mso-spacerun: yes"> </span>.<span | ||
+ | style="mso-spacerun: yes"> </span>*.<span | ||
+ | style="mso-spacerun: yes"> </span>.*** ******<span | ||
+ | style="mso-spacerun: yes"> </span>*.<br> | ||
+ | <br> | ||
+ | 1 ENO_DROME| Drosophila melanogaster <b>D</b>Lv<b>V</b>Glst<b>GQ</b> | ||
+ | <b>IKTG</b>Apc<b>R</b>sE <b>R</b>l<b>AK</b>y<b>NQ</b>IL<b>R</b> <b>IE</b>eeIGagvk | ||
+ | Fa<b>G</b>ksfgkpq 433<br> | ||
+ | 2 ENOA_HUMAN| | ||
+ | Homo sapiens <b>D</b>Lv<b>V</b>Glct<b>GQ</b> <b>IKTG</b>Apc<b>R</b>sE <b>R</b>l<b>AK</b>y<b>NQ</b>LL<b>R</b> | ||
+ | <b>IE</b>eeLGskak Fa<b>G</b>rnfrnpl 431<br> | ||
+ | 3 ENO_METJA| Methanococcus janaschii <b>D</b>Ls<b>V</b>Alns<b>GQ</b> | ||
+ | <b>IKTG</b>Apa<b>R</b>gE <b>R</b>t<b>AK</b>y<b>NQ</b>LI<b>R</b> <b>IE</b>qeLG-lsk | ||
+ | Ya<b>G</b>rnfrcpf 427<br> | ||
+ | 4 ENO_ECOLI| | ||
+ | Escherichia coli <b>D</b>La<b>V</b>Gtaa<b>GQ</b> <b>IKTG</b>Sms<b>R</b>sD | ||
+ | <b>R</b>v<b>AK</b>y<b>NQ</b>LI<b>R</b> <b>IE</b>eaLGekap Yn<b>G</b>rkeikgq 430<br> | ||
+ | 5 ENO_BACSU| | ||
+ | Bacillus subtilis <b>D</b>Ia<b>V</b>Atna<b>GQ</b> <b>IKTG</b>Aps<b>R</b>tD | ||
+ | <b>R</b>v<b>AK</b>y<b>NQ</b>LL<b>R</b> <b>IE</b>dqLAetaq Yh<b>G</b>insfynl 428<br> | ||
+ | 6 4ENL Yeast| Saccharomyces cerevisiae <b>D</b>Lv<b>V</b>Glrt<b>GQ</b> | ||
+ | <b>IKTG</b>Apa<b>R</b>sE <b>R</b>l<b>AK</b>l<b>NQ</b>LL<b>R</b> <b>IE</b>eeLGdnav | ||
+ | Fa<b>G</b>enfhhgd 434<o:p></o:p></span></p> | ||
+ | |||
+ | <p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | ||
+ | mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | ||
+ | yes"> | ||
+ | </span>*. *.<span style="mso-spacerun: yes"> </span>** ****.<span | ||
+ | style="mso-spacerun: yes"> </span>* . * ** **..* **<span | ||
+ | style="mso-spacerun: yes"> </span>..<span style="mso-spacerun: | ||
+ | yes"> </span>. *<o:p></o:p></span></p> | ||
+ | |||
+ | <span style='font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family: | ||
+ | "Times New Roman";mso-bidi-font-family:"Courier New";mso-ansi-language:EN-US; | ||
+ | mso-fareast-language:EN-US'><br clear=ALL style='page-break-before:always'> | ||
+ | </span> | ||
+ | |||
+ | <p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | ||
+ | mso-bidi-font-family:"Courier New"'> 1 ENO_DROME| | ||
+ | Drosophila melanogaster -- 433<br> | ||
+ | 2 ENOA_HUMAN| | ||
+ | Homo sapiens ak 433<br> | ||
+ | 3 ENO_METJA| Methanococcus janaschii -- 427<br> | ||
+ | 4 ENO_ECOLI| | ||
+ | Escherichia coli a- 431<br> | ||
+ | 5 ENO_BACSU| | ||
+ | Bacillus subtilis nk 430<br> | ||
+ | 6 4ENL Yeast| Saccharomyces cerevisiae kl 436<br> | ||
+ | |||
+ | |||
+ | |||
+ | |||
Summary of categories applied to a total of 436 residues in the PDB file sequence for a consensus level setting of 100%: | Summary of categories applied to a total of 436 residues in the PDB file sequence for a consensus level setting of 100%: |
Revision as of 23:37, 30 September 2012
Multiple Sequence Alignment (MSA) for enolase, an enzyme in glycolysis.
Key: IDENTICAL(*) SIMILAR(.) different Consensus Percentage is set to 100%.
1 ENO_DROME|
Drosophila melanogaster --------mt IkaIkARqIy DSRGNPTVEv
DLtt-elglf rAavPSGAST 41
2 ENOA_HUMAN|
Homo sapiens ---------s IlkIhAReIf DSRGNPTVEv DLft-skglf
rAavPSGAST 40
3 ENO_METJA| Methanococcus janaschii
mlynmderfe IkdIvAReVi DSRGNPTVEv EVitkgngyg sAivPSGAST
50
4 ENO_ECOLI|
Escherichia coli --------sk IvkIiGReIi DSRGNPTVEa
EVhleggfvg mAaaPSGAST 42
5 ENO_BACSU|
Bacillus subtilis -------mpy IvdVyAReVl DSRGNPTVEv
EVytetgafg rAlvPSGAST 43
6 4ENL Yeast| Saccharomyces cerevisiae ---------a VskVyARsVy
DSRGNPTVEv ELtt-ekgvf rSivPSGAST 40<o:p></o:p>
. . .* . *********
..
. ******
1 ENO_DROME| Drosophila melanogaster GvhEALElRD
nDKanYhGKS VlkAVghVNd tLgpelIkan ldvvdQasID
91
2 ENOA_HUMAN|
Homo sapiens GiyEALElRD nDKtrYmGKG
VskAVehINk tIapalVskk lnvteQekID 90
3 ENO_METJA| Methanococcus janaschii GthEALElRD
kEK-rFgGKG VlmAVenVNs iIrpeiLg-- ydarmQreID
97
4 ENO_ECOLI|
Escherichia coli GsrEALElRD gDKsrFlGKG
VtkAVaaVNg pIaqalIg-- kdakdQagID 90
5 ENO_BACSU| Bacillus
subtilis GeyEAVElRD gDKdrYlGKG VltAVnnVNe
iIapelLg-- fdvteQnaID 91
6 4ENL Yeast| Saccharomyces cerevisiae GvhEALEmRD
gDKskWmGKG VlhAVknVNd vIapafVkan idvsdQkaVD
90<o:p></o:p>
* **.* ** .* . **. * ** .* . . * .*
1 ENO_DROME| Drosophila melanogaster nfmIklDGTe
NKSKfGANAI LGVSlAvaKA GAakkgvPLY
khIAdlagn- 140
2 ENOA_HUMAN|
Homo sapiens klmIemDGTe NKSKfGANAI LGVSlAvcKA
GAvekgvPLY rhIAdlagn- 139
3 ENO_METJA| Methanococcus janaschii timIelDGTp
NKSRlGANAI LAVSlAvaKA AAatakiPLY
kyLGgfn--- 144
4 ENO_ECOLI|
Escherichia coli kimIdlDGTe NKSKfGANAI LAVSlAnaKA
AAaakgmPLY ehIAelngt- 139
5 ENO_BACSU|
Bacillus subtilis qllIelDGTe NKGKlGANAI LGVSmAcaRA
AAdflqiPLY qyLGgfn--- 138
6 4ENL Yeast| Saccharomyces cerevisiae dflIslDGTa
NKSKlGANAI LGVSlAasRA AAaeknvPLY
khLAdlsksk 140<o:p></o:p>
* *** **.. ***** *.** * .* .* *** .
1 ENO_DROME| Drosophila melanogaster -keiilPVPa
fNVINGGsHA gnkLamQEFM IlPtGAtsft
EAmKmGSeVY 189
2 ENOA_HUMAN|
Homo sapiens -sevilPVPa fNVINGGsHA gnkLamQEFM
IlPvGAanfr EAmRiGAeVY 188
3 ENO_METJA| Methanococcus janaschii --syvmPVPm
mNVINGGkHA gndLdlQEFM ImPvGAtsis
EAvRmGSeVY 192
4 ENO_ECOLI|
Escherichia coli pgkysmPVPm mNIINGGeHA dnnVdiQEFM
IqPvGAktvk EAiRmGSeVF 189
5 ENO_BACSU|
Bacillus subtilis --sktlPVPm mNIVNGGeHA
dnnVdiQEFM ImPvGApnfr EAlRmGAqIF 186
6 4ENL Yeast| Saccharomyces cerevisiae tspyvlPVPf
lNVLNGGsHA ggaLalQEFM IaPtGAktfa
EAlRiGSeVY 190<o:p></o:p>
*** *..*** ** . **** * * ** ** . *. ..<o:p></o:p>
1 ENO_DROME|
Drosophila melanogaster HhLknVikaK fgldataVGD EGGfAPnIqs
nkEALnlIsd AIakAGyt-- 237
2 ENOA_HUMAN|
Homo sapiens HnLknVikeK ygkdatnVGD EGGfAPnIle
nkEGLelLkt AIgkAGyt-- 236
3 ENO_METJA| Methanococcus janaschii HvLknVileK
ygknavnVGD EGGfAPpLkt srEALdlLte SVkkAGye--
240
4 ENO_ECOLI|
Escherichia coli HhLakVlkaK g--mntaVGD EGGyAPnLgs
naEALavIae AVkaAGyelg 237
5 ENO_BACSU|
Bacillus subtilis HsLksVlsaK g--lntaVGD EGGfAPnLgs
neEALqtIve AIekAGfkpg 234
6 4ENL Yeast| Saccharomyces cerevisiae HnLksLtkkR
ygasagnVGD EGGvAPnIqt aeEALdlIvd AIkaAGhd—238<o:p></o:p>
<![if !vml]><img width=155 height=106
src="msa3d_4enl_msa_files/image001.gif" v:shapes="_x0000_s1027"><![endif]>
*
5 ENO_BACSU|
Bacillus subtilis eeVklAmDaA SSEFYnkedG kYhLsgeg--
6 4ENL Yeast| Saccharomyces cerevisiae gkVkiGlDcA
01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)~
1 ENO_DROME| Drosophila melanogaster gkIeiGmDvA
ASEFYk--dG qYdLdfknek sdksqwlpad klanlykefi 285
2 ENOA_HUMAN|
Homo sapiens dkVviGmDvA ASEFFr--sG kYdLdfksp-
ddpsryispd qladlyksfi 283
3 ENO_METJA| Methanococcus janaschii deVvfAlDaA
ASEFYk--dG yYyVegkk-- ------ltre elldyykalv 280
4 ENO_ECOLI|
Escherichia coli kdItlAmDcA ASEFYk--dG kYvLagegn-
kaftse efthfleelt 280
vvktsa emvdwyeelv 278
. . * * .***. * *
.
01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)01:37, 1 October 2012 (IST)~
1 ENO_DROME| Drosophila melanogaster kdFPIVSIED
pfdqdhWeAw snltgctd-- IQIVGDDLtV TNpkrIatAV
333
2 ENOA_HUMAN|
Homo sapiens kdYPVVSIED pfdqddWgAw qkftasag-- IQVVGDDLtV
TNpkrIakAV 331
3 ENO_METJA| Methanococcus janaschii deYPIVSIED
pfheedFeGf amitkeld-- IQIVGDDLfV TNverLrkGI
328
4 ENO_ECOLI|
Escherichia coli kqYPIVSIED gldesdWdGf ayqtkvlgdk IQLVGDDLfV
TNtkiLkeGI 330
5 ENO_BACSU|
Bacillus subtilis skYPIISIED gldendWeGh kllterlgkk VQLVGDDLfV
TNtkkLseGI 328
6 4ENL Yeast| Saccharomyces cerevisiae krYPIVSIED
pfaeddWeAw shffktag-- IQIVADDLtV TNpkrIatAI
334<o:p></o:p>
.*..**** . .
.*.*.*** * ** . ..
1 ENO_DROME| Drosophila melanogaster
ekkacncLLL KvNQIGtVtE siaAhllAkk nGWgtmVSHR
SGETEDsfIG 383
2 ENOA_HUMAN|
Homo sapiens nekscncLLL KvNQIGsVtE slqAcklAqa
nGWgvmVSHR SGETEDtfIA 381
3 ENO_METJA| Methanococcus janaschii
emkaanaLLL KvNQIGtLsE avdAaqlAfr nGYgvvVSHR
SGETEDttIA 378
4 ENO_ECOLI|
Escherichia coli ekgiansILI KfNQIGsLtE tlaAikmAkd
aGYtavISHR SGETEDatIA 380
5 ENO_BACSU|
Bacillus subtilis kngvgnsILI KvNQIGtLtE tfdAiemAkr
aGYtavISHR SGETEDstIA 378
6 4ENL Yeast| Saccharomyces cerevisiae ekkaadaLLL
KvNQIGtLsE sikAaqdSfa aGWgvmVSHR SGETEDtfIA
384<o:p></o:p>
.*. . **** . *
* . *. .*** ****** *.
1 ENO_DROME| Drosophila melanogaster DLvVGlstGQ
IKTGApcRsE RlAKyNQILR IEeeIGagvk
FaGksfgkpq 433
2 ENOA_HUMAN|
Homo sapiens DLvVGlctGQ IKTGApcRsE RlAKyNQLLR
IEeeLGskak FaGrnfrnpl 431
3 ENO_METJA| Methanococcus janaschii DLsVAlnsGQ
IKTGApaRgE RtAKyNQLIR IEqeLG-lsk
YaGrnfrcpf 427
4 ENO_ECOLI|
Escherichia coli DLaVGtaaGQ IKTGSmsRsD
RvAKyNQLIR IEeaLGekap YnGrkeikgq 430
5 ENO_BACSU|
Bacillus subtilis DIaVAtnaGQ IKTGApsRtD
RvAKyNQLLR IEdqLAetaq YhGinsfynl 428
6 4ENL Yeast| Saccharomyces cerevisiae DLvVGlrtGQ
IKTGApaRsE RlAKlNQLLR IEeeLGdnav
FaGenfhhgd 434<o:p></o:p>
*. *. ** ****. * . * ** **..* ** .. . *<o:p></o:p>
1 ENO_DROME|
Drosophila melanogaster -- 433
2 ENOA_HUMAN|
Homo sapiens ak 433
3 ENO_METJA| Methanococcus janaschii -- 427
4 ENO_ECOLI|
Escherichia coli a- 431
5 ENO_BACSU|
Bacillus subtilis nk 430
6 4ENL Yeast| Saccharomyces cerevisiae kl 436
Summary of categories applied to a total of 436 residues in the PDB file sequence for a consensus level setting of 100%:
33% (142) IDENTICAL(*) 16% (68) SIMILAR(.) 52% (226) different
Definitions of SIMILAR groups of amino acids:
ILV Ile Leu Val hydrophobic, aliphatic / medium-sized side-chain
FWY Phe Trp Tyr hydrophobic, aromatic / large side-chain (Tyr polar)
KRH Lys Arg His + charge
DE Asp Glu - charge
GAS Gly Ala Ser small
P Pro helix breaking
C Cys disulfide-forming
TNQM Thr Asn Gln Met polar (except Met)