Virus coat proteins (VCP) or capsid proteins coat the virus. The various VCPs are designated as Vp1, Vp2, etc. The VCP P domain (protruding domain) in noroviruses binds histo blood group antigen receptors.
3D structures of virus coat proteins
VCP of parvovirus
2cas – cpvVCP - canine parvovirus
1s58 - VCP – human parvovirus
1k3v – VCP Vp2 – pig parvovirus
1ijs, 1p5w, 1p5y – cpvVCP (mutant) + DNA
4dpv - cpvVCP + DNA
VCP of HIV
1afv, 1e6j – HivVCP + antibody – HIV-1
3gv2, 3h47, 3h4e – HivVCP (mutant)
1aum, 1a8o, 1a43, 2ont, 3lry, 3mge – HivVCP C terminal
2jyl, 2jyg - HivVCP C terminal (mutant) – NMR
3dph, 3ds2, 3ds5, 3dtj - HivVCP C terminal (mutant)
2buo - HivVCP C terminal + inhibitor of capsid assembly
2xt1, 2xv6, 2xxm - HivVCP C terminal + camelid VHH 9
3ds0, 3ds1, 3ds3, 3ds4 - HivVCP C terminal (mutant) + inhibitor of capsid assembly
1m9c, 1m9d - HivVCP N terminal + cyclophilin
1m9e, 1m9f, 1m9x, 1m9y - HivVCP N terminal (mutant)+ cyclophilin
2x82, 2x83 – VCP N terminal – HIV-2
VCP of Rous sarcoma virus
1d1d – RsvVCP – Rous sarcoma virus – NMR
1em9, 1p7n – RsvVCP N terminal
1eoq, 3g1g, 3g1i, 3g21, 2x8q - RsvVCP C terminal
3g0v, 3g26, 3g28, 3g29 - RsvVCP C terminal (mutant)
3tir – RsvVCP P27
VCP of rotavirus
1qhd – brvVCP Vp6 – bovine rotavirus
3kz4 - brvVCP Vp2
2b4h, 2b4i, 2p3i, 2p3k - rrVCP Vp4 – rhesus rotavirus
2p3j – rrVCP Vp4 (mutant)
3gzt, 3gzu – rrVCP Vp7 – Cryo EM
2i2s, 3sis, 3sit - VCP Vp4 – pig rotavirus
2dwr - hrvVCP Vp8* – human rotavirus
4drr, 4drv, 4ds0 - hrvVCP Vp8* + antigen
VCP of hepatitis virus
1qgt, 2qij – hbvVCP – hepatitis B virus
3kxs – hbvVCP (mutant)
2ztn, 3ggq, 2zzq, 3rkc - hevVCP – hepatitis E virus
3rkd – hevVCP + antibody
3iyo – hevVCP – Cryo EM
VCP of norovirus
1ihm, 3by1, 3by2, 3d26, 2zl5, 2zl6, 2zl7 – NvVCP – Norwalk virus
3onu, 3ony, 2obr, 2obs, 2obt, 3lq6, 3lqe, 3ry8 – NvVCP P domain
3pa1, 3pa2, 3q38, 3q39, 3q3a, 3q6q, 3q6r, 3asp, 3asq, 3asr, 3ass, 3ast - NvVCP P domain + antigen
3m8l – VCP – feline calcivirus
3v7a – NvVCP P domain + antibody
VCP of plant viruses
1js9, 1yc6 – VCP – brome mosaic virus
1f15 – VCP – cucumber mosaic virus
1auy, 1w39 – VCP – turnip yellow mosaic virus
3zxa - tcvVCP – turnip crinkle virus
3zx8, 3zx9 – tcvVCP – Cryo EM
1f2n - VCP – rice yellow mosaic virus
1a34, 2tmv, 1ei7 – tmvVCP + RNA]] - satellite tobacco mosaic virus
3j06 - tmvVCP + RNA – Cryo EM
2om3, 2xea – tmvVCP – Cryo EM
3kml – tmvVCP (mutant)
2buk - VCP]] - satellite tobacco necrosis virus
1a6c - VCP]] - tobacco ringspot virus
1e57 – VCP – Physalis mottle virus
2izw - VCP – ryegrass mottle virus
1opo - VCP – carnation mottle virus
1ny7, 1cwp – VCP – cowpea mosaic virus
1za7 - VCP (mutant) – cowpea chlorotic mottle virus
1pgl, 1pgw – VCP + RNA – bean pod mottle virus
2tbv – VCP – tomato bushy stunt virus
1smv – VCP – sesbania mosaic virus
1stm – VCP - satellite panicum mosaic virus
4sbv – VCP – southern bean mosaic virus
1m1c – VCP – yeast L-A virus
1laj – VCP + RNA – tomato aspermy virus
1uf2 – VCP + proteins – rice dwarf virus
3iym – VCP – Penicillium stoloniferum virus – Cryo EM
VCP by fiber diffraction
1cgm – VCP – cucumber green mottle virus
1rmv - VCP + RNA – fibgrass mosaic virus
1pfi, 2ifm – VCP – Pf1 virus
1vtm - VCP - satellite tobacco mosaic virus
VCP of various viruses
2mev, 1mec – VCP – mengo virus
2snv, 2snw, 1svp, 1kxa, 1wyk – svVCP – sindbis virus
1svp, 1kxb, 1kxc, 1kxd, 1kxe, 1kxf – svVCP (mutant)
1ld4, 3j0f – svVCP + envelope proteins – Cryo EM
1bvp – VCP – bluetongue virus VP7
1nov – VCP – Nodamura virus
1mvm, 1z1c – mvVCP + DNA – minute virus
2xgk – mvVCP Vp2 (mutant)
1bbt, 1fod, 1fmd, 1qgc – fmdvVCP – foot and mouth disease virus
2wv4, 2wv5 – fmdvVCP Vp1 + picornain
1fpv, 1c8e, 1c8f, 1c8g – VCP – feline panleukopenia virus
1c8d, 1c8h - VCP – canine panleukopenia virus
2bbv – VCP + RNA – black beetle virus
1pov – VCP – poliovirus
1sva – svVCP – simian virus 40
3bwq, 3bwr – svVCP Vp1
1sid, 1sie, 1vpn, 1vps, 1cn3 – VCP – murine polyomavirus
3s7v - pvVCP Vp1 – polyomavirus
3s7x - pvVCP Vp1 (mutant)
1vcp, 1vcq – VCP – semliki forest virus
2yew - VCP + envelope glycoprotein – Barmah forest virus - Cryo EM
2eia, 1eia – VCP – equine infectious anemia virus
1dnv – VCP – Galleria mellonella densovirus
1ep5, 1ep6 – eevVCP C terminal – equine encephalitis virus
3j0c - eevVCP C terminal + envelope glycoprotein – Cryo EM
3ve6 – eevVCP NLS + importin
1qrj – HtlvVCP – HumanT-cell lymphotrophic virus – NMR
1g03 - HtlvVCP N terminal]] - NMR
1dzl – hpvVCP L1 (mutant) – Human papillomavirus
3iyj - VCP L1 – bovine papillomavirus – Cryo EM
2r5h, 2r5i, 2r5j, 2r5k - hpvVCP L1
[[1f8v – VCP + RNA – pariacoto virus
2r18, [[2z7j – VCP Vp3 – birnavirus
2vf1 – VCP – rabbit picobirnavirus
1jew – VCP + receptor – coxsackievvirus – Cryo EM
1fn9 – VCP sigma 3 – reovirus
3iyl – VCP Vp4+Vp1+Vp3 – grass carp virus – Cryo EM
1lp3, 2g8g, 2qa0, 3ra2, 3ra4, 3ra8, 3ra9, 3raa, 3ng9 – aavVCP – adeno-associated virus
3kic, 3kie, 1vu0, 1vu1, 3shm, 3tsx, 3ux1 – aavVCP Vp1
3j1s - aavVCP Vp1 + antibody
2gh8 – VCP – San Miguel sea lion virus
1j5q, 1m3y – PbcvVCP – Parmecium bursaria chlorella virus
1m4x – PbcvVCP – Cryo EM
1no7 – VCP Vp5 – Human herpes simplex virus
1ohf – VCP – Nudaurelia capensis omega virus
1mqt – VCP – swine vesicular disease virus
2p5p – VCP domain III – West Nile virus
3cnf – VCP Vp1+Vp3 – polyhedrosis virus – Cryo EM
2v4x – VCP N terminal – sheep retrovirus
3fbm – VCP Vp2 – avian infectious bursal disease virus
2qqp – VCP + RNA – Providence virus
2kgf – mpmvVCP N-terminal – Mason-Pfizer monkey virus
4ard – mpmvVCP P27 – Cryo EM
3ide – VCP Vp2 – infectious pancreatic necrosis virus
3lob, 4fte, 4fts – fhvVCP (mutant) + RNA – flock house virus
4fsj, 4ftb - fhvVCP + RNA
3nap – VCP – triatoma virus
2xgu, 2xgv – relvVCP N terminal – rabbit endogenous lentivirus
3zue – VCP Vp60]] - rabbit hemorrhagic disease virus – Cryo EM
2xgy – relvVCP N terminal + cyclophilin
3r0r – VCP – pig circovirus
3izx – bmcvVCP Vp3 + structural protein 5 – Bombyx mori cypovirus
– Cryo EM
3j17 - bmcvVCP Vp3 Vp5
3vbf, 3vbh, 3vbo, 3vbr, 3vbs, 3vbu – VCP – human enterovirus
3s6p – VCP – Helicoverpa armigera stunt virus
