Sandbox Reserved 1172

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{{Sandbox_Reserved_CH462_Central_Metabolism}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
{{Sandbox_Reserved_CH462_Central_Metabolism}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
==Lysophosphatidic Acid Receptor 1==
==Lysophosphatidic Acid Receptor 1==
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<StructureSection load='4z34' size='340' side='right' caption='Cartoon representation of the LPA<sub>1</sub> protein and its antagonist, ON7. ([https://en.wikipedia.org/wiki/Protein_Data_Bank PDB] code [http://www.rcsb.org/pdb/explore/explore.do?structureId=4z34 4Z34]) ' scene='72/721543/Overall/1'>
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<StructureSection load='4z34' size='340' side='right' caption='Cartoon representation of the LPA1 protein and its antagonist, ON7. ([https://en.wikipedia.org/wiki/Protein_Data_Bank PDB] code [http://www.rcsb.org/pdb/explore/explore.do?structureId=4z34 4Z34]) ' scene='72/721543/Overall/1'>
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Lysophosphatidic Acid Receptor 1 (commonly referred to as LPA1) is a [[G protein-coupled receptor]] and one of 6 different LPA receptors (LPA1-LPA6) that bind the phospholipid derivative [https://en.wikipedia.org/wiki/Lysophosphatidic_acid lysophosphatidic acid (LPA)], a signaling molecule that acts as a potent mitogen upon binding to one of its six receptors.<ref name="regpeps">PMID: 26091040</ref>, ----------- LPA1 is part of the larger EDG receptor family(link) which includes the more widely known sphingosine 1-phopshate receptors.
Lysophosphatidic Acid Receptor 1 (commonly referred to as LPA1) is a [[G protein-coupled receptor]] and one of 6 different LPA receptors (LPA1-LPA6) that bind the phospholipid derivative [https://en.wikipedia.org/wiki/Lysophosphatidic_acid lysophosphatidic acid (LPA)], a signaling molecule that acts as a potent mitogen upon binding to one of its six receptors.<ref name="regpeps">PMID: 26091040</ref>, ----------- LPA1 is part of the larger EDG receptor family(link) which includes the more widely known sphingosine 1-phopshate receptors.
== Structure ==
== Structure ==
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[[Image:ON7.png|200 px|left|thumb|LPA1 receptor in tan, antagonist ON7 in green and red]]
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[[Image:ON7.png|200 px|left|thumb|LPA<sub>1</sub> receptor in tan, antagonist ON7 in green and red]]
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The LPA<sub>1</sub> receptor protein is composed of 364 amino acids with a mass of approximately 41 kDa. Just as other G-protein coupled receptors, LPA1 contains seven alpha helices which make up the seven transmembrane spanning domains with three intracellular loops and three extracellular loops. Within these helices is an amphiphilic binding pocket enabling the LPA molecule to bind.
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The LPA<sub>1</sub> receptor protein is composed of 364 amino acids with a mass of approximately 41 kDa. Just as other G-protein coupled receptors, LPA<sub>1</sub> contains seven alpha helices which make up the seven transmembrane spanning domains with three intracellular loops and three extracellular loops. Within these helices is an amphiphilic binding pocket enabling the LPA molecule to bind.
=== Key Ligand Interactions ===
=== Key Ligand Interactions ===
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Three separate interactions with an antagonist of LPA1, ON7, help demonstrate the key interactions that stabilize the binding of the LPA phospholipid to this receptor. At the polar region of the binding pocket, the majority of this region is stabilized by <scene name='72/721543/Arg124gln125/1'>Arg124 and Gln125</scene> forming ionic and polar interactions with the carboxylic acid and the hydroxyl group of ON7. In addition, interplay between <scene name='72/721543/Lys39_and_glu293/4'>Glu293 and Lys39</scene> causes another stabilizing component of the ON7 antagonist. Glu293 forms polar interactions with Lys39, positioning it in close proximity to to the carboxylic acid of ON7, which then interactions with Lys39 via ionic bonding. While Lys39 is highly conserved among all six LPA receptors, a His40 residue is present that is specific to the LPA1 receptor. <scene name='72/721543/His40/1'>His40</scene> forms both ionic and polar interactions with the carboxylic acid of ON7. The protonation of this residue has been found to greatly affect the binding affinity of LPA, and is an important link to tumor growth and survival in acidic environments.
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Three separate interactions with an antagonist of LPA<sub>1</sub>, ON7, help demonstrate the key interactions that stabilize the binding of the LPA phospholipid to this receptor. At the polar region of the binding pocket, the majority of this region is stabilized by <scene name='72/721543/Arg124gln125/1'>Arg124 and Gln125</scene> forming ionic and polar interactions with the carboxylic acid and the hydroxyl group of ON7. In addition, interplay between <scene name='72/721543/Lys39_and_glu293/4'>Glu293 and Lys39</scene> causes another stabilizing component of the ON7 antagonist. Glu293 forms polar interactions with Lys39, positioning it in close proximity to to the carboxylic acid of ON7, which then interactions with Lys39 via ionic bonding. While Lys39 is highly conserved among all six LPA receptors, a His40 residue is present that is specific to the LPA<sub>1</sub> receptor. <scene name='72/721543/His40/1'>His40</scene> forms both ionic and polar interactions with the carboxylic acid of ON7. The protonation of this residue has been found to greatly affect the binding affinity of LPA, and is an important link to tumor growth and survival in acidic environments.
== Function ==
== Function ==
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The LPA1 receptor has been found to initiate downstream signaling cascades with three [https://en.wikipedia.org/wiki/G_protein G proteins] that signal for cell proliferation, survival, and migration. The LPA1 receptor is present in nearly all cells and tissues throughout the body, and deletion of the LPA1 receptor has been found to have physiological effects on every organ system. Despite this receptor being expressed throughout the body, LPA1 has been found to be expressed highly in neural tissue, aiding in Schwann cell migration and myelination, formation of synapses, and glial cell growth. Recent studies have also found that the LPA1 receptor is important in pain signal initiation via a [https://en.wikipedia.org/wiki/Rho-associated_protein_kinase ROCK] pathway.
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The LPA<sub>1</sub> receptor has been found to initiate downstream signaling cascades with three [https://en.wikipedia.org/wiki/G_protein G proteins] that signal for cell proliferation, survival, and migration. The LPA<sub>1</sub> receptor is present in nearly all cells and tissues throughout the body, and deletion of the LPA<sub>1</sub> receptor has been found to have physiological effects on every organ system. Despite this receptor being expressed throughout the body, LPA<sub>1</sub> has been found to be expressed highly in neural tissue, aiding in Schwann cell migration and myelination, formation of synapses, and glial cell growth. Recent studies have also found that the LPA<sub>1</sub> receptor is important in pain signal initiation via a [https://en.wikipedia.org/wiki/Rho-associated_protein_kinase ROCK] pathway.
== Disease Relevance ==
== Disease Relevance ==
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The LPA1 receptor, depending on its level of expression, has been linked to both protective functions in the presence of a disease as well as causing a particular illness. For example, in patients with heart diseases, LPA1 has been found to communicate with [[PI3K]], [https://en.wikipedia.org/wiki/Protein_kinase_B PKB], and [[ERK]] to induce a hypertrophic response in the heart in order to offset reduced heart contractions. In addition, due to LPA1's function of pain signaling, overexertion of this protein can cause both [https://en.wikipedia.org/wiki/Allodynia allodynia] or [https://en.wikipedia.org/wiki/Hyperalgesia hyperalgesia], common symptoms of multiple sclerosis or a stroke.
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The LPA<sub>1</sub> receptor, depending on its level of expression, has been linked to both protective functions in the presence of a disease as well as causing a particular illness. For example, in patients with heart diseases, LPA<sub>1</sub> has been found to communicate with [[PI3K]], [https://en.wikipedia.org/wiki/Protein_kinase_B PKB], and [[ERK]] to induce a hypertrophic response in the heart in order to offset reduced heart contractions. In addition, due to LPA<sub>1</sub>'s function of pain signaling, overexertion of this protein can cause both [https://en.wikipedia.org/wiki/Allodynia allodynia] or [https://en.wikipedia.org/wiki/Hyperalgesia hyperalgesia], common symptoms of multiple sclerosis or a stroke.
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Because of the mitogen signaling activity of LPA1, abnormal expression or mutation of this receptor has been linked to tumor growth, survival, and migration in both liver and lung tumors. As recently discussed, the His40 on LPA1, when protonated, increased LPA binding affinity is increase by up to 1kcal/mol. Because of this, in an acidic environment that is typically produced by [https://en.wikipedia.org/wiki/Tumor_hypoxia hypoxic tumors] creating lactic acid, LPA1 activity is increased, allowing these tumors to continue to proliferate, migrate, and survive. Lastly, due to the function of LPA1 in myelinating Schwann cells, mutation of the receptor can also lead to a decrease in [https://en.wikipedia.org/wiki/Prepulse_inhibition prepulse inhibition], a general sign of schizophrenia.
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Because of the mitogen signaling activity of LPA<sub>1</sub>, abnormal expression or mutation of this receptor has been linked to tumor growth, survival, and migration in both liver and lung tumors. As recently discussed, the His40 on LPA<sub>1</sub>, when protonated, increased LPA binding affinity is increase by up to 1kcal/mol. Because of this, in an acidic environment that is typically produced by [https://en.wikipedia.org/wiki/Tumor_hypoxia hypoxic tumors] creating lactic acid, LPA<sub>1</sub> activity is increased, allowing these tumors to continue to proliferate, migrate, and survive. Lastly, due to the function of LPA<sub>1</sub> in myelinating Schwann cells, mutation of the receptor can also lead to a decrease in [https://en.wikipedia.org/wiki/Prepulse_inhibition prepulse inhibition], a general sign of schizophrenia.
== Receptor Comparison ==
== Receptor Comparison ==
=== Sphingosine 1-Phosphate Receptor ===
=== Sphingosine 1-Phosphate Receptor ===
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LPA1 belongs to the EDG (endothelial differentiation gene) family of [https://en.wikipedia.org/wiki/Lysophospholipid_receptor lysophospholipid receptors]. This family also includes the [https://en.wikipedia.org/wiki/S1PR1 sphingosine 1-phosphate receptor 1] (S1P1), which has many structural similarities to LPA1. In fact, the transmembrane regions share a sequence identity of 41%. A defining difference between these two receptors their mode of ligand access to the binding site. Where as the hydrophobic [https://en.wikipedia.org/wiki/Sphingosine-1-phosphate S1P ligand] enters S1P1 via the membrane, LPA1 has an extracellular opening that allows LPA access from the extracellular space. Structural evidence for this altered ligand pathway include global changes in the positioning of the extracellular loops (ECL) and transmembrane helices (TM). Specifically, this includes slight divergence of <scene name='72/721543/Tmvii_and_tmi/1'>TMI</scene>, which is positioned 3 angstroms closer to TMVII compared to S1P1, and a repositioning of <scene name='72/721543/Ecl_regions/1'>ECL3</scene>, resulting in a divergence of 8 angstroms from S1P1. This narrowing of the gap between TMI and TMVII blocks membrane ligand access, while the greater distance between ECL3 and the other extracellular loops promotes extracellular access. Additionally, ECL0 is helical in S1P1, but lacks secondary structure in LPA1. This increased flexibility that results further promotes favorable access from the extracellular space.
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LPA<sub>1</sub> belongs to the EDG (endothelial differentiation gene) family of [https://en.wikipedia.org/wiki/Lysophospholipid_receptor lysophospholipid receptors]. This family also includes the [https://en.wikipedia.org/wiki/S1PR1 sphingosine 1-phosphate receptor 1] (S1P<sub>1</sub>), which has many structural similarities to LPA<sub>1</sub>. In fact, the transmembrane regions share a sequence identity of 41%. A defining difference between these two receptors is their mode of ligand access to the binding site. Where as the hydrophobic [https://en.wikipedia.org/wiki/Sphingosine-1-phosphate S1P ligand] enters S1P<sub>1</sub> via the membrane, LPA<sub>1</sub> has an extracellular opening that allows LPA access from the extracellular space. Structural evidence for this altered ligand pathway include global changes in the positioning of the extracellular loops (ECL) and transmembrane helices (TM). Specifically, this includes slight divergence of <scene name='72/721543/Tmvii_and_tmi/1'>TMI</scene>, which is positioned 3 angstroms closer to TMVII compared to S1P<sub>1</sub>, and a repositioning of <scene name='72/721543/Ecl_regions/1'>ECL3</scene>, resulting in a divergence of 8 angstroms from S1P<sub>1</sub>. This narrowing of the gap between TMI and TMVII blocks membrane ligand access, while the greater distance between ECL3 and the other extracellular loops promotes extracellular access. Additionally, ECL0 is helical in S1P<sub>1</sub>, but lacks secondary structure in LPA<sub>1</sub>. This increased flexibility that results further promotes favorable access from the extracellular space.
<scene name='72/721543/Tmvii_and_tmi/1'>TMI</scene>
<scene name='72/721543/Tmvii_and_tmi/1'>TMI</scene>
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=== Endocannabinoid Receptor 1 ===
=== Endocannabinoid Receptor 1 ===
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LPA1 also is closely related to the [http://www.nature.com/ijo/journal/v30/n1s/full/0803272a.html cannabinoid receptor] [https://en.wikipedia.org/wiki/Cannabinoid_receptor_type_1 CB1]. This close relation gives CB1 the ability to bind to analogs of LPA and vice versa, which opens the possibility of metabolic crosstalk between the two signaling systems. This connection is made possible through ligand phosphorylation and dephosphorylation. Specifically, complementary access to the LPA1 binding pocket can be achieved by phosphorylated CB1 ligand analogs, while complementary access to the CB1 binding site required dephosphorylation of LPA1 ligand analogs.
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LPA<sub>1</sub> also is closely related to the [http://www.nature.com/ijo/journal/v30/n1s/full/0803272a.html cannabinoid receptor] [https://en.wikipedia.org/wiki/Cannabinoid_receptor_type_1 CB1]. This close relation gives CB1 the ability to bind to analogs of LPA and vice versa, which opens the possibility of metabolic crosstalk between the two signaling systems. This connection is made possible through ligand phosphorylation and dephosphorylation. Specifically, complementary access to the LPA<sub>1</sub> binding pocket can be achieved by phosphorylated CB1 ligand analogs, while complementary access to the CB1 binding site required dephosphorylation of LPA<sub>1</sub> ligand analogs.
<scene name='72/721543/Asp129_and_trp210/2'>TextToBeDisplayed</scene>
<scene name='72/721543/Asp129_and_trp210/2'>TextToBeDisplayed</scene>

Revision as of 13:28, 29 March 2016

This Sandbox is Reserved from Jan 11 through August 12, 2016 for use in the course CH462 Central Metabolism taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1160 through Sandbox Reserved 1184.
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Lysophosphatidic Acid Receptor 1

Cartoon representation of the LPA1 protein and its antagonist, ON7. (PDB code 4Z34)

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References

  1. Chrencik JE, Roth CB, Terakado M, Kurata H, Omi R, Kihara Y, Warshaviak D, Nakade S, Asmar-Rovira G, Mileni M, Mizuno H, Griffith MT, Rodgers C, Han GW, Velasquez J, Chun J, Stevens RC, Hanson MA. Crystal Structure of Antagonist Bound Human Lysophosphatidic Acid Receptor 1. Cell. 2015 Jun 18;161(7):1633-43. doi: 10.1016/j.cell.2015.06.002. PMID:26091040 doi:http://dx.doi.org/10.1016/j.cell.2015.06.002
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