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Samatey/3

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Revision as of 15:54, 19 October 2016

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Scientific Reports an online, open access journal: nature.com/srep

Structural insights into bacterial flagellar hook similarities and specifities.
Young-Ho Yoon, Clive S. Barker, Paula V. Bulieris, Hideyuki Matsunami, and Fadel A. Samatey.
Scientific Reports 6:35552, 2016: nature.com/articles/srep35552. (DOI: 10.1038/srep35552)

The interactive Molecular Tour below assumes that you are familiar with the journal article.

Molecular Tour

1 Monomer Structures
- 1.1 Campylobacter jejuni
- 1.2 Caulobacter crescentus
2 Comparison with Salmonella

Monomer Structures

Campylobacter jejuni

The structure of the flagellar hook monomer FlgE2 (gene Cj1729c) of Campylobacter jejuni () was determined to resolution 2.45 Å (5az4).

FlgE2 of C. jejuni (FlgE2-Cj; Q0P7Q2_CAMJE) consists of 865 amino acids. The fragment crystallized^[1] was residues 91-828 (738 residues, 85% of full length). The crystallographic model has coordinates for residues 94-819 (726 residues, 84% of full length). The 79 kD fragment crystallized will be referred to as FlgE2-Cj79.

N->C Rainbow Color Scheme

FlgE2-Cj is composed of (D0-D4). D0 was not present in the fragment FlgE2-Cj79 in order to facilitate crystallization. D1-3 consist of discontinuous segments of the single protein chain, while D4 is one continuous segment. Here is a scene . The domains . D3 contains three alpha-helices while D4 contains one.

Alpha Helices, Beta Strands

Caulobacter crescentus

The structure of the flagellar hook monomer FlgE (gene flgE) of Caulobacter cresentus Å (5ay6).

N->C Rainbow Color Scheme

FlgE of C. crecentus (FlgE-Cc; P35806, FLGE_CAUCR, gene CC_0902) consists of 591 amino acids. The fragment crystallized was residues 165-470 (306 residues, 52% of full length). The crystallographic model has coordinates for residues 167-469 (303 residues, 51% of full length). The fragment crystallized is 32 kD, and will be referred to as FlgE-Cc32.

FlgE-Cc32 forms domains D2 and D3. D0 and D1 were removed to facilitate crystallization. D2 is formed by two discontinuous segments, while D3 is a single continuous segment inserted between the segments of D2. Here the model is .

Comparison with Salmonella

FlgE (gene STM1177) of Salmonella enterica serotype Typhimurium (FlgE-St, P0A1J1_SALTY) contains 403 amino acids, compared to the 865 in FlgE-Cj. However, the D1 and D2 domains are very similar in the two species (FlgE-St42: 1wlg).

This animation takes ~2 minutes. Reload the page to cancel.

FlgE-Cj contains the additional domains D3 and D4, making it a "hook with a hat".

A small adjustment in the angle between D1 and D2 in FlgE-Cj79 (a reduction of about 12^o) enables with FlgE-St42 (RMSD for 137 of 287 alpha carbons: 0.94 Å). The adjustment can also be .

There is also close structural similarity between domains D1 and D2 comparing FlgE-Cc32 with FlgE-St42, and comparing Flg-Cj79 with Flg-Cc32 (Supplementary Fig. 3 in the journal article).

Notes and References

↑ Kido Y, Yoon YH, Samatey FA. Crystallization of a 79 kDa fragment of the hook protein FlgE from Campylobacter jejuni. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Dec 1;67(Pt, 12):1653-7. Epub 2011 Nov 30. PMID:22139190 doi:10.1107/S1744309111043272

Proteopedia Page Contributors and Editors (what is this?)

Eric Martz

Retrieved from "http://52.214.119.220/wiki/index.php/Samatey/3"

@@ Line 13: / Line 13: @@
 <span style="font-size:120%; line-height:160%;">Young-Ho '''Yoon''', Clive S. '''Barker''', Paula V. '''Bulieris''', Hideyuki '''[[User:Hideyuki_Matsunami|Matsunami]]''', and Fadel A. '''[[Fadel_A._Samatey_Group|Samatey]]'''.
 <br>
-''Scientific Reports'' <font color="red">in press</font> '''6''':35552, 2016: [http://www.nature.com/articles/srep35552 nature.com/articles/srep35552].  ([http://dx.doi.org/10.1038/srep35552 DOI: 10.1038/srep35552])
+''Scientific Reports'' '''6''':35552, 2016: [http://www.nature.com/articles/srep35552 nature.com/articles/srep35552].  ([http://dx.doi.org/10.1038/srep35552 DOI: 10.1038/srep35552])
 </span>
 <br><br>

Samatey/3

From Proteopedia

Revision as of 15:54, 19 October 2016

Molecular Tour

Contents

Monomer Structures

Campylobacter jejuni

Caulobacter crescentus

Comparison with Salmonella

Notes and References

Proteopedia Page Contributors and Editors (what is this?)

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