Ionotropic Glutamate Receptors
From Proteopedia
(Difference between revisions)
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====Pharmaceutical Relevance==== | ====Pharmaceutical Relevance==== | ||
As mentioned previously, extensive investigation into the [[Pharmaceutical drugs|pharmaceutical potential]] of IGluRs as a target for treating various ailments including [[Autism Spectrum Disorders]] symptoms is ongoing. In addition to agents which reduce neural excitation such as benzodiazapines, small molecules that potentiate AMPA receptor currents have been proven to reduce cognitive deficits caused by neurodegenerative diseases such as [[Alzheimer's Disease]].<ref name="Purcel"/> Modulators such as aniracetam and CX614 <scene name='Ionotropic_Glutamate_Receptors/Locked_into_place/2'>bind on the backside</scene> ([[2al4]]) of the ligand-binding core through interactions with a “proline ceiling” and a “serine floor”, stabilizing the closed-clamshell conformation. Although these compounds would likely be ineffective in the case of Autism patients because they slow the deactivation of the IGluR channels, this class of compounds has exciting therapeutic potential.<ref name="Jin"/>. The glutamate receptor inhibitor [[Diuril]] is used as drug in cases of hypertension, edema, diabetes insipidus and kidney stones<ref>PMID: 13580922</ref>. | As mentioned previously, extensive investigation into the [[Pharmaceutical drugs|pharmaceutical potential]] of IGluRs as a target for treating various ailments including [[Autism Spectrum Disorders]] symptoms is ongoing. In addition to agents which reduce neural excitation such as benzodiazapines, small molecules that potentiate AMPA receptor currents have been proven to reduce cognitive deficits caused by neurodegenerative diseases such as [[Alzheimer's Disease]].<ref name="Purcel"/> Modulators such as aniracetam and CX614 <scene name='Ionotropic_Glutamate_Receptors/Locked_into_place/2'>bind on the backside</scene> ([[2al4]]) of the ligand-binding core through interactions with a “proline ceiling” and a “serine floor”, stabilizing the closed-clamshell conformation. Although these compounds would likely be ineffective in the case of Autism patients because they slow the deactivation of the IGluR channels, this class of compounds has exciting therapeutic potential.<ref name="Jin"/>. The glutamate receptor inhibitor [[Diuril]] is used as drug in cases of hypertension, edema, diabetes insipidus and kidney stones<ref>PMID: 13580922</ref>. | ||
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| + | ==3D structures of glutamate receptor == | ||
| + | [[Glutamate receptor 3D structures]] | ||
</StructureSection> | </StructureSection> | ||
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| + | |||
| + | *GluR domains: ATD 1-393; LBD 394-544; TMD 545-908 | ||
*Ionotropic glutamate receptor 0 | *Ionotropic glutamate receptor 0 | ||
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**[[5ybg]], [[5ybf]] - hIGluR2 LBD + potentiator + Glu<br /> | **[[5ybg]], [[5ybf]] - hIGluR2 LBD + potentiator + Glu<br /> | ||
**[[4u1y]], [[4u2p]], [[5l1b]] - rIGluR2 <br /> | **[[4u1y]], [[4u2p]], [[5l1b]] - rIGluR2 <br /> | ||
| + | **[[5vov]], [[5vou, [[5vot]] - rIGluR2 + calcium channel γ-2 – Cryo EM<br /> | ||
**[[3n6v]], [[3o2j]], [[5n6p]] - rIGluR2 ATD (mutant) – rat<br /> | **[[3n6v]], [[3o2j]], [[5n6p]] - rIGluR2 ATD (mutant) – rat<br /> | ||
**[[3hsy]], [[3h5v]], [[3h5w]] - rIGluR2 ATD<br /> | **[[3hsy]], [[3h5v]], [[3h5w]] - rIGluR2 ATD<br /> | ||
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**[[3pmv]], [[3pmw]], [[3pmx]], [[3o28]], [[3o29]], [[3o2a]], [[3o6g]], [[3o6h]], [[3o6i]], [[3m3l]], [[3lsl]], [[3tdj]] - rIGluR2 LBD + positive allosteric modulator + Glu<br /> | **[[3pmv]], [[3pmw]], [[3pmx]], [[3o28]], [[3o29]], [[3o2a]], [[3o6g]], [[3o6h]], [[3o6i]], [[3m3l]], [[3lsl]], [[3tdj]] - rIGluR2 LBD + positive allosteric modulator + Glu<br /> | ||
**[[2al4]], [[1p1o]] - rIGluR2 LBD (mutant) + positive allosteric modulator<br /> | **[[2al4]], [[1p1o]] - rIGluR2 LBD (mutant) + positive allosteric modulator<br /> | ||
| - | **[[3ijo]], [[3ijx]], [[3il1]], [[3ilt]], [[3ilu]], [[3lsl]], [[3tdj]], [[5oew]] - rIGluR2 + positive allosteric modulator + Glu<br /> | + | **[[3ijo]], [[3ijx]], [[3il1]], [[3ilt]], [[3ilu]], [[3lsl]], [[3tdj]], [[5oew]], [[6hch]], [[6hcc]], [[6hcb]], [[6hc9]], [[6faz]] - rIGluR2 + positive allosteric modulator + Glu<br /> |
**[[2xx8]], [[2xx7]], [[2xx9]], [[2xxh]], [[2xxi]], [[3lsf]], [[3h6t]], [[3h6u]], [[3h6v]], [[3h6w]], [[3bbr]], [[3tkd]], [[4fat]], [[4iy5]], [[4iy6]], [[4lz5]], [[4lz7]], [[4lz8]], [[4n07]], [[5o9a]] - rIGluR2 LBD (mutant) + positive allosteric modulator + Glu<br /> | **[[2xx8]], [[2xx7]], [[2xx9]], [[2xxh]], [[2xxi]], [[3lsf]], [[3h6t]], [[3h6u]], [[3h6v]], [[3h6w]], [[3bbr]], [[3tkd]], [[4fat]], [[4iy5]], [[4iy6]], [[4lz5]], [[4lz7]], [[4lz8]], [[4n07]], [[5o9a]] - rIGluR2 LBD (mutant) + positive allosteric modulator + Glu<br /> | ||
| - | **[[1mm6]], [[1mm7]] - rIGluR2 LBD + positive allosteric modulator<br /> | + | **[[1mm6]], [[1mm7]], [[6hca]] - rIGluR2 LBD + positive allosteric modulator<br /> |
**[[3ik6]] - rIGluR2 + Duiril + Glu<br /> | **[[3ik6]] - rIGluR2 + Duiril + Glu<br /> | ||
*''GluR2 antagonist complex'' | *''GluR2 antagonist complex'' | ||
| - | **[[3r7x]] - hIGluR2 + antagonist<br /> | + | **[[3r7x]], [[6fqk]], [[6fqj]], [[6fqi]] - hIGluR2 LBD + antagonist<br /> |
| + | **[[6fqh]], [[6fqg]] - hIGluR2 LBD (mutant) + antagonist<br /> | ||
**[[3kgc]], [[3kg2]], [[2cmo]] - rIGluR2 LBD + antagonist + Glu<br /> | **[[3kgc]], [[3kg2]], [[2cmo]] - rIGluR2 LBD + antagonist + Glu<br /> | ||
**[[4u4g]] - rIGluR2 + antagonist<br /> | **[[4u4g]] - rIGluR2 + antagonist<br /> | ||
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*''GluR2 agonist complex'' | *''GluR2 agonist complex'' | ||
| - | **[[3rtf]], [[3rtw]], [[3pd8]], [[3pd9]], [[3bft]], [[3bfu]], [[1wvj]], [[1syh]], [[1syi]], [[1ms7]], [[1mqd]], [[1nnp]], [[1nnk]], [[1m5b]], [[1m5c]], [[1m5d]], [[1m5e]], [[1m5f]], [[1ftm]], [[4g8m]], [[4igt]], [[5vhw]], [[5vhx]], [[5vhy]], [[5vhz]], [[5fho]], [[5fhn]], [[5fhm]], [[4x48]], [[4q30]], [[5nih]], [[5ng9]] - rIGluR2 LBD + agonist<br /> | + | **[[3rtf]], [[3rtw]], [[3pd8]], [[3pd9]], [[3bft]], [[3bfu]], [[1wvj]], [[1syh]], [[1syi]], [[1ms7]], [[1mqd]], [[1nnp]], [[1nnk]], [[1m5b]], [[1m5c]], [[1m5d]], [[1m5e]], [[1m5f]], [[1ftm]], [[4g8m]], [[4igt]], [[5vhw]], [[5vhx]], [[5vhy]], [[5vhz]], [[5fho]], [[5fhn]], [[5fhm]], [[4x48]], [[4q30]], [[5nih]], [[5ng9]], [[6q60]], [[6q54]] - rIGluR2 LBD + agonist<br /> |
**[[3b6t]], [[2al5]], [[2anj]], [[1p1q]], [[1p1u]], [[1p1w]], [[1lb8]] - rIGluR2 LBD (mutant) + agonist<br /> | **[[3b6t]], [[2al5]], [[2anj]], [[1p1q]], [[1p1u]], [[1p1w]], [[1lb8]] - rIGluR2 LBD (mutant) + agonist<br /> | ||
**[[1lbc]], [[5elv]] - rIGluR2 LBD (mutant) + agonist + Glu<br /> | **[[1lbc]], [[5elv]] - rIGluR2 LBD (mutant) + agonist + Glu<br /> | ||
| - | **[[2p2a]], [[5buu]] - rIGluR2 LBD + agonist + Glu<br /> | + | **[[2p2a]], [[5buu]], [[6hch]], [[6hcc]], [[6hcb]] - rIGluR2 LBD + agonist + Glu<br /> |
*''GluR2 partial agonist complex'' | *''GluR2 partial agonist complex'' | ||
| + | **[[5zg2]] - hIGluR2 + partial agonist <br /> | ||
| + | **[[5zg3]], [[5zg1]], [[5zg0]], [[5ybg]], [[5ybf]] - hIGluR2 + partial agonist + Glu<br /> | ||
**[[4u4f]] - rIGluR2 + partial agonist<br /> | **[[4u4f]] - rIGluR2 + partial agonist<br /> | ||
**[[1y1m]], [[2aix]], [[1y1z]], [[1y20]], [[1mqg]], [[1mqh]], [[1mqi]], [[1mqj]], [[1mxu]], [[1mxv]], [[1mxw]], [[1mxx]], [[1mxy]], [[1mxz]], [[1my0]], [[1my1]], [[1my2]], [[1my3]], [[1my4]], [[1fw0]], [[1ftk]], [[1gr2]] - rIGluR2 LBD + partial agonist<br /> | **[[1y1m]], [[2aix]], [[1y1z]], [[1y20]], [[1mqg]], [[1mqh]], [[1mqi]], [[1mqj]], [[1mxu]], [[1mxv]], [[1mxw]], [[1mxx]], [[1mxy]], [[1mxz]], [[1my0]], [[1my1]], [[1my2]], [[1my3]], [[1my4]], [[1fw0]], [[1ftk]], [[1gr2]] - rIGluR2 LBD + partial agonist<br /> | ||
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*''GluR2 ligand complex'' | *''GluR2 ligand complex'' | ||
| - | **[[3dp6]], [[2uxa]], [[2i3v]], [[2i3w]], [[1ftj]], [[4z0i]], [[4o3b]] - rIGluR2 LBD + Glu<br /> | + | **[[3dp6]], [[2uxa]], [[2i3v]], [[2i3w]], [[1ftj]], [[4z0i]], [[4o3b]], [[6gl4]] - rIGluR2 LBD + Glu<br /> |
| - | **[[3b6q]], [[3b6w]], [[2gfe]], [[3t9x]], [[4u4s]], [[4u4x]], [[4yu0]] - rIGluR2 LBD (mutant) + Glu<br /> | + | **[[3b6q]], [[3b6w]], [[2gfe]], [[3t9x]], [[4u4s]], [[4u4x]], [[4yu0]], [[6giv]] - rIGluR2 LBD (mutant) + Glu<br /> |
**[[4o3a]], [[4o3c]] - rIGluR2 LBD + Asp<br /> | **[[4o3a]], [[4o3c]] - rIGluR2 LBD + Asp<br /> | ||
**[[4u1o]], [[4u1w]], [[4u1x]], [[4u1z]] - rIGluR2 LBD + kainate derivative<br /> | **[[4u1o]], [[4u1w]], [[4u1x]], [[4u1z]] - rIGluR2 LBD + kainate derivative<br /> | ||
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**[[5l2e]] – rIGluRδ2 <br /> | **[[5l2e]] – rIGluRδ2 <br /> | ||
**[[5cc2]] – rIGluRδ2 LBD + agonist<br /> | **[[5cc2]] – rIGluRδ2 LBD + agonist<br /> | ||
| + | |||
| + | *Ionotropic glutamate receptor 1+2 | ||
| + | |||
| + | **[[6qkz]], [[6qkc]] – rIGluR1 + rGluR2 + calcium channel g-8 – Cryo EM <br /> | ||
| + | **[[6njl]] – rIGluR1 + rGluR2 + calcium channel g-8 + auxiliary protein + antibody – Cryo EM <br /> | ||
| + | |||
| + | *Ionotropic glutamate receptor 1+2+3 | ||
| + | |||
| + | **[[6njn]] – rIGluR1 + rGluR2 + rIGluR3 + calcium channel g-8 + auxiliary protein + antibody – Cryo EM <br /> | ||
*Ionotropic glutamate receptor 2+3 | *Ionotropic glutamate receptor 2+3 | ||
**[[5ide]], [[5idf]], [[5fwy]] – rIGluR2 + rGluR3 <br /> | **[[5ide]], [[5idf]], [[5fwy]] – rIGluR2 + rGluR3 <br /> | ||
| + | **[[6njm]] – rGluR2 + rIGluR3 + calcium channel γ-8 + auxiliary protein + antibody – Cryo EM <br /> | ||
*Ionotropic glutamate receptor 2+4 | *Ionotropic glutamate receptor 2+4 | ||
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*Ionotropic glutamate receptor 3 | *Ionotropic glutamate receptor 3 | ||
| - | **[[3o21]], [[3p3w]] – rIGluR3 ATD<br /> | + | **[[3o21]], [[3p3w]], [[6fpj]], [[6flr]] – rIGluR3 ATD<br /> |
**[[3m3k]] – rIGluR3 LBD<br /> | **[[3m3k]] – rIGluR3 LBD<br /> | ||
**[[3rt6]], [[3rt8]], [[3dp4]] – rIGluR3 LBD + agonist<br /> | **[[3rt6]], [[3rt8]], [[3dp4]] – rIGluR3 LBD + agonist<br /> | ||
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**[[1ycj]] – rGluK1 LBD + Glu<br /> | **[[1ycj]] – rGluK1 LBD + Glu<br /> | ||
**[[5nf5]], [[5neb]] – rGluK1 LBD + Glu analog<br /> | **[[5nf5]], [[5neb]] – rGluK1 LBD + Glu analog<br /> | ||
| - | **[[3s2v]], [[4dld]], [[5m2v]], [[4ymb]], [[4qf9]], [[4mf3]] | + | **[[3s2v]], [[4dld]], [[5m2v]], [[4ymb]], [[4qf9]], [[4mf3]], [[6fz4]] – rGluK1 LBD + antagonist<br /> |
**[[4e0x]] – rGluK1 LBD + kainate<br /> | **[[4e0x]] – rGluK1 LBD + kainate<br /> | ||
**[[5mfq]], [[5mfv]], [[5mfw]] – rGluK1 LBD + kainite + allosteric modulator<br /> | **[[5mfq]], [[5mfv]], [[5mfw]] – rGluK1 LBD + kainite + allosteric modulator<br /> | ||
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**[[3u92]], [[4e0w]] - rGluK3 LBD + kainate<br /> | **[[3u92]], [[4e0w]] - rGluK3 LBD + kainate<br /> | ||
**[[4g8n]], [[4igr]], [[4nwd]], [[4nwc]], [[5o4f]] - rGluK3 LBD + agonist<br /> | **[[4g8n]], [[4igr]], [[4nwd]], [[4nwc]], [[5o4f]] - rGluK3 LBD + agonist<br /> | ||
| + | **[[6f29]], [[6f28]] - rGluK3 LBD + pyrimidine derivative<br /> | ||
*Ionotropic kainate receptor 4 | *Ionotropic kainate receptor 4 | ||
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*''NMDAR subunit NR1'' | *''NMDAR subunit NR1'' | ||
| + | **[[2nr1]] – hNMDAR TMD - NMR<br /> | ||
**[[4kcc]] – rNMDAR LBD <br /> | **[[4kcc]] – rNMDAR LBD <br /> | ||
**[[3q41]] – rNMDAR N ATD <br /> | **[[3q41]] – rNMDAR N ATD <br /> | ||
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**[[5h8f]] – hNMDAR LBD <br /> | **[[5h8f]] – hNMDAR LBD <br /> | ||
| - | **[[ | + | **[[6mmx]], [[6mmw]], [[6mmv]], [[6mmu]], [[6mmt]], [[6mms]], [[6mmr]], [[6mmp]], [[6mmn]], [[6mmm]], [[6mml]], [[6mmk]], [[6mmj]], [[6mmi]], [[6mmh]], [[6mmg]], [[6mmb]], [[6mma]], [[6mm9]], [[6irh]], [[6irg]], [[6irf]], [[6ira]] – rNMDAR ATD+LBD+TMD – Cryo EM <br /> |
**[[4nf4]], [[4nf5]], [[4nf6]], [[4nf8]], [[2a5t]] – rNMDAR LBD <br /> | **[[4nf4]], [[4nf5]], [[4nf6]], [[4nf8]], [[2a5t]] – rNMDAR LBD <br /> | ||
| + | **[[5tpz]] – XlNMDAR ATD <br /> | ||
| + | |||
| + | *''NMDAR subunit NR1+NR2A complex'' | ||
| + | |||
| + | **[[5tpa]], [[5tp9]] – hNMDAR LBD + antagonist<br /> | ||
| + | **[[5kdt]], [[5kcj]] – hNMDAR LBD + modulator<br /> | ||
| + | **[[5tpa]], [[5tp9]], [[5kdt]], [[5kcj]], [[5i2n]], [[5i2k]], [[5h8q]], [[5h8n]], [[5h8h]] – hNMDAR LBD + allosteric modulator<br /> | ||
**[[5vij]], [[5vii]], [[5vih]], [[5dex]], [[5u8c]] – rNMDAR LBD + antagonist<br /> | **[[5vij]], [[5vii]], [[5vih]], [[5dex]], [[5u8c]] – rNMDAR LBD + antagonist<br /> | ||
| + | **[[5vij]], [[5vii]], [[5vih]], [[5u8c]] – rNMDAR LBD+TMD + antagonist<br /> | ||
**[[5jty]], [[5fxj]] – rNMDAR + agonist<br /> | **[[5jty]], [[5fxj]] – rNMDAR + agonist<br /> | ||
**[[5tq0]], [[5tq2]] – rNMDAR LBD + antibody<br /> | **[[5tq0]], [[5tq2]] – rNMDAR LBD + antibody<br /> | ||
**[[5i59]], [[5i58]], [[5i57]], [[5i56]] – rNMDAR LBD + allosteric modulator<br /> | **[[5i59]], [[5i58]], [[5i57]], [[5i56]] – rNMDAR LBD + allosteric modulator<br /> | ||
| + | **[[5tq2]], [[5tq0]], [[5tpw]] – XlNMDAR1 ATD (mutant) + rNMDAR2A LBD + antibody<br /> | ||
**[[5tpw]] – XlNMDAR1 LBD (mutant) + rNMDAR2A LBD + antibody<br /> | **[[5tpw]] – XlNMDAR1 LBD (mutant) + rNMDAR2A LBD + antibody<br /> | ||
**[[5ewm]], [[5ewl]] – XlNMDAR1 ATD (mutant) + rNMDAR2A ATD (mutant) + antagonist<br /> | **[[5ewm]], [[5ewl]] – XlNMDAR1 ATD (mutant) + rNMDAR2A ATD (mutant) + antagonist<br /> | ||
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*''NMDAR subunit NR1+NR2B'' | *''NMDAR subunit NR1+NR2B'' | ||
| + | **[[6cna]] – rNMDAR ATD+LBD+TMD – Cryo EM <br /> | ||
**[[5tpz]] – rNMDAR LBD <br /> | **[[5tpz]] – rNMDAR LBD <br /> | ||
**[[4pe5]], [[4tll]], [[4tlm]] – rNMDAR (mutants)<br /> | **[[4pe5]], [[4tll]], [[4tlm]] – rNMDAR (mutants)<br /> | ||
**[[5b3j]] – XlNMDAR1 ATD (mutant) + rNMDAR2B ATD (mutant) + antibody<br /> | **[[5b3j]] – XlNMDAR1 ATD (mutant) + rNMDAR2B ATD (mutant) + antibody<br /> | ||
| + | **[[5un1]] – XlNMDAR LBD+TMD<br /> | ||
**[[5ipv]], [[5ipt]], [[5ips]], [[5ipr]], [[5ipq]], [[5iov]], [[5iou]] – rNMDAR2B (mutant) + NMDAR1 + inhibitor<br /> | **[[5ipv]], [[5ipt]], [[5ips]], [[5ipr]], [[5ipq]], [[5iov]], [[5iou]] – rNMDAR2B (mutant) + NMDAR1 + inhibitor<br /> | ||
| - | **[[5ipu]] – XlNMDAR2B (mutant) + NMDAR1 (mutant) + inhibitor<br /> | + | **[[5ipu]], [[6e7x]], [[6e7w]], [[6e7v]], [[6e7u]], [[6e7t]], [[6e7s]], [[6e7r]] – XlNMDAR2B (mutant) + NMDAR1 (mutant) + inhibitor<br /> |
**[[3qel]], [[3qem]], [[5ewj]] – XlNMDAR ATD (mutant) + ifenprodil<br /> | **[[3qel]], [[3qem]], [[5ewj]] – XlNMDAR ATD (mutant) + ifenprodil<br /> | ||
| + | |||
| + | *NMDAR subunit NR1+NR2A+NR2B | ||
| + | |||
| + | **[[5up2]], [[5uow]] – XlNMDAR + antibody – Cryo EM<br /> | ||
}} | }} | ||
==Topic Page on Glutamate Receptor GluA2 structure== | ==Topic Page on Glutamate Receptor GluA2 structure== | ||
Revision as of 09:18, 14 July 2019
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Page Development
This article was developed based on lectures given in Chemistry 543 by Prof. Clarence E. Schutt at Princeton University.
3D structures of glutamate receptor
Updated on 14-July-2019 {{#tree:id=OrganizedByTopic|openlevels=0|
- GluR domains: ATD 1-393; LBD 394-544; TMD 545-908
- Ionotropic glutamate receptor 0
- 2pyy - IGluR2 LBD + Glu – Nostoc punctiforme
- Ionotropic glutamate receptor 1
- Ionotropic glutamate receptor 2
- 2wjw, 2wjx – hIGluR2 ATD - human
- 3rn8, 3rnn – hIGluR2 LBD + potentiator
- 5ybg, 5ybf - hIGluR2 LBD + potentiator + Glu
- 4u1y, 4u2p, 5l1b - rIGluR2
- 5vov, [[5vou, 5vot - rIGluR2 + calcium channel γ-2 – Cryo EM
- 3n6v, 3o2j, 5n6p - rIGluR2 ATD (mutant) – rat
- 3hsy, 3h5v, 3h5w - rIGluR2 ATD
- 3bki, 5l1e, 5l1f 5l1e, 5l1f, 5l1g, 5l1h - rIGluR2 LBD + inhibitor
- 1fto, 4h8j - rIGluR2 LBD
- 3t93, 4u2r - rIGluR2 LBD (mutant)
- 5fth, 5fti, 5ns9 - rIGluR2 LBD (mutant) + Glu
- 5kk2, 5vov, 5vou, 5vot - rIGluR2 + calcium channel γ2 subunit – Cryo-EM
- 2wjw, 2wjx – hIGluR2 ATD - human
- GluR2 positive allosteric modulator complex
- 2xhd, 5h8s - hIGluR2 LBD + positive allosteric modulator + Glu
- 3pmv, 3pmw, 3pmx, 3o28, 3o29, 3o2a, 3o6g, 3o6h, 3o6i, 3m3l, 3lsl, 3tdj - rIGluR2 LBD + positive allosteric modulator + Glu
- 2al4, 1p1o - rIGluR2 LBD (mutant) + positive allosteric modulator
- 3ijo, 3ijx, 3il1, 3ilt, 3ilu, 3lsl, 3tdj, 5oew, 6hch, 6hcc, 6hcb, 6hc9, 6faz - rIGluR2 + positive allosteric modulator + Glu
- 2xx8, 2xx7, 2xx9, 2xxh, 2xxi, 3lsf, 3h6t, 3h6u, 3h6v, 3h6w, 3bbr, 3tkd, 4fat, 4iy5, 4iy6, 4lz5, 4lz7, 4lz8, 4n07, 5o9a - rIGluR2 LBD (mutant) + positive allosteric modulator + Glu
- 1mm6, 1mm7, 6hca - rIGluR2 LBD + positive allosteric modulator
- 3ik6 - rIGluR2 + Duiril + Glu
- 2xhd, 5h8s - hIGluR2 LBD + positive allosteric modulator + Glu
- GluR2 antagonist complex
A topic page describing in detail the GluA2 structure described in 3kg2
- GluR2 agonist complex
- 3rtf, 3rtw, 3pd8, 3pd9, 3bft, 3bfu, 1wvj, 1syh, 1syi, 1ms7, 1mqd, 1nnp, 1nnk, 1m5b, 1m5c, 1m5d, 1m5e, 1m5f, 1ftm, 4g8m, 4igt, 5vhw, 5vhx, 5vhy, 5vhz, 5fho, 5fhn, 5fhm, 4x48, 4q30, 5nih, 5ng9, 6q60, 6q54 - rIGluR2 LBD + agonist
- 3b6t, 2al5, 2anj, 1p1q, 1p1u, 1p1w, 1lb8 - rIGluR2 LBD (mutant) + agonist
- 1lbc, 5elv - rIGluR2 LBD (mutant) + agonist + Glu
- 2p2a, 5buu, 6hch, 6hcc, 6hcb - rIGluR2 LBD + agonist + Glu
- 3rtf, 3rtw, 3pd8, 3pd9, 3bft, 3bfu, 1wvj, 1syh, 1syi, 1ms7, 1mqd, 1nnp, 1nnk, 1m5b, 1m5c, 1m5d, 1m5e, 1m5f, 1ftm, 4g8m, 4igt, 5vhw, 5vhx, 5vhy, 5vhz, 5fho, 5fhn, 5fhm, 4x48, 4q30, 5nih, 5ng9, 6q60, 6q54 - rIGluR2 LBD + agonist
- GluR2 partial agonist complex
- 5zg2 - hIGluR2 + partial agonist
- 5zg3, 5zg1, 5zg0, 5ybg, 5ybf - hIGluR2 + partial agonist + Glu
- 4u4f - rIGluR2 + partial agonist
- 1y1m, 2aix, 1y1z, 1y20, 1mqg, 1mqh, 1mqi, 1mqj, 1mxu, 1mxv, 1mxw, 1mxx, 1mxy, 1mxz, 1my0, 1my1, 1my2, 1my3, 1my4, 1fw0, 1ftk, 1gr2 - rIGluR2 LBD + partial agonist
- 1xhy, 1p1n, 1lbb, 3t96, 3t9h, 3t9u, 3t9v, 5jei - rIGluR2 LBD (mutant) + partial agonist
- 4u2q - rIGluR2 + partial agonist
- 4u5b, 4u5c, 4u5d, 4u5e, 4u5f - rIGluR2 + partial agonist + snail toxin + modulator
- 4gxs, 4u1o, 4u1w, 4u1x, 4u1z - rIGluR2 LBD + kainate derivative
- 5zg2 - hIGluR2 + partial agonist
- GluR2 ligand complex
- 3dp6, 2uxa, 2i3v, 2i3w, 1ftj, 4z0i, 4o3b, 6gl4 - rIGluR2 LBD + Glu
- 3b6q, 3b6w, 2gfe, 3t9x, 4u4s, 4u4x, 4yu0, 6giv - rIGluR2 LBD (mutant) + Glu
- 4o3a, 4o3c - rIGluR2 LBD + Asp
- 4u1o, 4u1w, 4u1x, 4u1z - rIGluR2 LBD + kainate derivative
- 4uqk, 4uqj, 4uq6 - rIGluR2 + quisqualate – Cryo EM
- 4wxj - DmIGluR2 LBD + Glu
- 3dp6, 2uxa, 2i3v, 2i3w, 1ftj, 4z0i, 4o3b, 6gl4 - rIGluR2 LBD + Glu
- Ionotropic glutamate receptor δ
- Ionotropic glutamate receptor 1+2
- Ionotropic glutamate receptor 1+2+3
- 6njn – rIGluR1 + rGluR2 + rIGluR3 + calcium channel g-8 + auxiliary protein + antibody – Cryo EM
- 6njn – rIGluR1 + rGluR2 + rIGluR3 + calcium channel g-8 + auxiliary protein + antibody – Cryo EM
- Ionotropic glutamate receptor 2+3
- Ionotropic glutamate receptor 2+4
- 5fwx – rIGluR2 ATD + rIGluR4 ATD
- 5fwx – rIGluR2 ATD + rIGluR4 ATD
- Ionotropic glutamate receptor 3
- 3o21, 3p3w, 6fpj, 6flr – rIGluR3 ATD
- 3m3k – rIGluR3 LBD
- 3rt6, 3rt8, 3dp4 – rIGluR3 LBD + agonist
- 3m3f – rIGluR3 LBD + allosteric modulator
- 3dln - rIGluR3 LBD + Glu
- 4f1y - rIGluR3 LBD + CNQX
- 4f22, 4f39, 4f3g - rIGluR3 LBD + kainate
- 4f31 - rIGluR3 LBD (mutant) + kainate
- 4f29 - rIGluR3 LBD + quisqualate
- 4f2o, 4f2q - rIGluR3 LBD (mutant) + quisqualate
- 4f3b - rIGluR3 LBD (mutant) + Glu
- 3o21, 3p3w, 6fpj, 6flr – rIGluR3 ATD
- Ionotropic glutamate receptor 4
- Ionotropic glutamate receptor 5
- 3fuz, 2zns – hIGluR5 LBD + Glu
- 3fv1, 3fv2, 3fvg, 3fvk, 3fvn, 3fvo, 2znt, 2znu - hIGluR5 LBD + agonist
- 1txf - rIGluR5 LBD + Glu
- 2ojt - rIGluR5 + anion
- 3c31, 3c32, 3c33, 3c34, 3c35, 3c36 - rIGluR5 LBD + ion
- 2wky, 3gba, 3gbb, 2pbw, 2f34, 2f35, 2f36 – rIGluR5 LBD + agonist
- 2qs1, 2qs2, 2qs3, 2qs4 - rIGluR5 LBD (mutant) + agonist
- 1vso - rIGluR5 LBD + antagonist
- 3fuz, 2zns – hIGluR5 LBD + Glu
- Ionotropic glutamate receptor 6
- Metabotropic glutamate receptor see Metabotropic glutamate receptor
- Ionotropic kainate receptor 1
- Ionotropic kainate receptor 2
- 3qxm - hGluK2 LBD + toxin
- 2xxr – rGluK2 LBD + Glu
- 4h8i, 5cmm - rGluK2 LBD + Glu derivative
- 2xxu, 2xxx, 2xxw, 4bdl, 4bdn, 4bdq, 5cmk – rGluK2 LBD (mutant) + Glu
- 4bdm, 4bdo, 4bdr – rGluK2 LBD (mutant) + kainate
- 2xxt – rGluK2 LBD + partial agonist
- 2xxv, 2xxy – rGluK2 LBD (mutant) + partial agonist
- 3qlt - rGluK2 residues 32-420 (mutant)
- 1yae, 5kuf - rGluK2 LBD + agonist
- 5kuh - rGluK2 LBD (mutant) + agonist
- 4uqq - rGluK2 ATD,LBD,TMD (mutant) + agonist
- 3qxm - hGluK2 LBD + toxin
- Ionotropic kainate receptor 3
- Ionotropic kainate receptor 4
- 5ikb – rGluK4 LBD + kainate
- 5ikb – rGluK4 LBD + kainate
- Ionotropic kainate receptor 5
- NMDA receptor (NMDAR)
- NMDAR subunit NR1
- 2nr1 – hNMDAR TMD - NMR
- 4kcc – rNMDAR LBD
- 3q41 – rNMDAR N ATD
- 1y1m, 1y1z, 1y20 – NMDAR LBD (mutant) + partial agonist
- 2hqw – NMDAR C terminal + calmodulin
- 1pb7 – rNMDAR LBD + glycine
- 1pb8, 1pb9 – rNMDAR LBD + serine
- 1pbq – rNMDAR LBD + DCKA
- 4kfq – rNMDAR LBD + antagonist
- 5fxk, 5fxi, 5fxh, 5fxg – rNMDAR (mutant) – Cryo EM
- 3qek – XlNMDA R ATD (mutant) – Xenopus laevis
- 2nr1 – hNMDAR TMD - NMR
- NMDAR subunit NR2A
- NMDAR subunit NR2B
- NMDAR subunit NR3A
- NMDAR subunit NR3B
- 2rcb - rNMDAR LBD + serine
- 2rcb - rNMDAR LBD + serine
- NMDAR subunit NR2D
- NMDAR subunit NR1+NR2A
- NMDAR subunit NR1+NR2A complex
- 5tpa, 5tp9 – hNMDAR LBD + antagonist
- 5kdt, 5kcj – hNMDAR LBD + modulator
- 5tpa, 5tp9, 5kdt, 5kcj, 5i2n, 5i2k, 5h8q, 5h8n, 5h8h – hNMDAR LBD + allosteric modulator
- 5vij, 5vii, 5vih, 5dex, 5u8c – rNMDAR LBD + antagonist
- 5vij, 5vii, 5vih, 5u8c – rNMDAR LBD+TMD + antagonist
- 5jty, 5fxj – rNMDAR + agonist
- 5tq0, 5tq2 – rNMDAR LBD + antibody
- 5i59, 5i58, 5i57, 5i56 – rNMDAR LBD + allosteric modulator
- 5tq2, 5tq0, 5tpw – XlNMDAR1 ATD (mutant) + rNMDAR2A LBD + antibody
- 5tpw – XlNMDAR1 LBD (mutant) + rNMDAR2A LBD + antibody
- 5ewm, 5ewl – XlNMDAR1 ATD (mutant) + rNMDAR2A ATD (mutant) + antagonist
- 5tpa, 5tp9 – hNMDAR LBD + antagonist
- NMDAR subunit NR1+NR2B
- 6cna – rNMDAR ATD+LBD+TMD – Cryo EM
- 5tpz – rNMDAR LBD
- 4pe5, 4tll, 4tlm – rNMDAR (mutants)
- 5b3j – XlNMDAR1 ATD (mutant) + rNMDAR2B ATD (mutant) + antibody
- 5un1 – XlNMDAR LBD+TMD
- 5ipv, 5ipt, 5ips, 5ipr, 5ipq, 5iov, 5iou – rNMDAR2B (mutant) + NMDAR1 + inhibitor
- 5ipu, 6e7x, 6e7w, 6e7v, 6e7u, 6e7t, 6e7s, 6e7r – XlNMDAR2B (mutant) + NMDAR1 (mutant) + inhibitor
- 3qel, 3qem, 5ewj – XlNMDAR ATD (mutant) + ifenprodil
- 6cna – rNMDAR ATD+LBD+TMD – Cryo EM
- NMDAR subunit NR1+NR2A+NR2B
}}
Topic Page on Glutamate Receptor GluA2 structure
There is a topic page describing in detail the GluA2 structure described in 3kg2. The page is meant to complement the original publication of the structure by Sobolevsky et al.[2][9] with matching colors, etc..
See Also
- Glutamate Receptor Symmetry Analysis
- Glutamate receptor (GluA2) structure in detail
- Metabotropic glutamate receptor
- Membrane Channels & Pumps
- Alzheimer's Disease
References
- ↑ 1.0 1.1 1.2 Jin R, Clark S, Weeks AM, Dudman JT, Gouaux E, Partin KM. Mechanism of positive allosteric modulators acting on AMPA receptors. J Neurosci. 2005 Sep 28;25(39):9027-36. PMID:16192394 doi:25/39/9027
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 Sobolevsky AI, Rosconi MP, Gouaux E. X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor. Nature. 2009 Dec 10;462(7274):745-56. Epub . PMID:19946266 doi:10.1038/nature08624
- ↑ 3.0 3.1 3.2 3.3 Purcell AE, Jeon OH, Zimmerman AW, Blue ME, Pevsner J. Postmortem brain abnormalities of the glutamate neurotransmitter system in autism. Neurology. 2001 Nov 13;57(9):1618-28. PMID:11706102
- ↑ Welsh JP, Ahn ES, Placantonakis DG. Is autism due to brain desynchronization? Int J Dev Neurosci. 2005 Apr-May;23(2-3):253-63. PMID:15749250 doi:10.1016/j.ijdevneu.2004.09.002
- ↑ Zuo J, De Jager PL, Takahashi KA, Jiang W, Linden DJ, Heintz N. Neurodegeneration in Lurcher mice caused by mutation in delta2 glutamate receptor gene. Nature. 1997 Aug 21;388(6644):769-73. PMID:9285588 doi:10.1038/42009
- ↑ Rubenstein JL, Merzenich MM. Model of autism: increased ratio of excitation/inhibition in key neural systems. Genes Brain Behav. 2003 Oct;2(5):255-67. PMID:14606691
- ↑ Jin R, Singh SK, Gu S, Furukawa H, Sobolevsky AI, Zhou J, Jin Y, Gouaux E. Crystal structure and association behaviour of the GluR2 amino-terminal domain. EMBO J. 2009 Jun 17;28(12):1812-23. Epub 2009 May 21. PMID:19461580 doi:10.1038/emboj.2009.140
- ↑ HERRMANN GR, HEJTMANCIK MR, GRAHAM RN, MARBURGER RC. A new superior oral diuretic drug, chlorothiazide (diuril); clinical evaluation. Tex State J Med. 1958 Sep;54(9):639-45. PMID:13580922
- ↑ Wollmuth LP, Traynelis SF. Neuroscience: Excitatory view of a receptor. Nature. 2009 Dec 10;462(7274):729-31. PMID:20010675 doi:10.1038/462729a
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