User:Karsten Theis/Animation course
From Proteopedia
(Difference between revisions)
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<jmol><jmolLink><script>script inline @{speed + x1}</script><text>V1</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x2}</script><text>V2</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x3}</script><text>V3</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x4}</script><text>V4</text></jmolLink></jmol> | <jmol><jmolLink><script>script inline @{speed + x1}</script><text>V1</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x2}</script><text>V2</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x3}</script><text>V3</text></jmolLink></jmol> <jmol><jmolLink><script>script inline @{speed + x4}</script><text>V4</text></jmolLink></jmol> | ||
| + | ===Dock a ligand=== | ||
| + | <jmol><jmolLink><script>script 52/520489/Ligand_pocket/2.spt; select protein; color group; center selected; select BF0; set picking dragselected; set allowrotateselected; temp0 = {BF0}.xyz.all</script><text>click to prepare</text></jmolLink></jmol> | ||
| + | |||
| + | Store ligand position: | ||
| + | <jmol><jmolLink><script>temp1 = {BF0}.xyz.all</script><text>scene1</text></jmolLink></jmol> | ||
| + | <jmol><jmolLink><script>temp2 = {BF0}.xyz.all</script><text>scene2</text></jmolLink></jmol> | ||
| + | <jmol><jmolLink><script>temp3 = {BF0}.xyz.all</script><text>scene3</text></jmolLink></jmol> | ||
| + | <jmol><jmolLink><script>temp4 = {BF0}.xyz.all</script><text>scene4</text></jmolLink></jmol> | ||
| + | |||
| + | Recall ligand position: | ||
| + | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp1} 30</script><text>scene1</text></jmolLink></jmol> | ||
| + | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp2} 30</script><text>scene2</text></jmolLink></jmol> | ||
| + | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp3} 30</script><text>scene3</text></jmolLink></jmol> | ||
| + | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp4} 30</script><text>scene4</text></jmolLink></jmol> | ||
| + | |||
| + | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp0} 30; ROTATE COMPARE {BF0} @{temp1} 30; ROTATE COMPARE {BF0} @{temp2} 30; ROTATE COMPARE {BF0} @{temp3} 30; ROTATE COMPARE {BF0} @{temp4} 30;</script><text>Animation forwards</text></jmolLink></jmol> | ||
| + | |||
| + | <jmol><jmolLink><script>ROTATE COMPARE {BF0} @{temp4} 30; ROTATE COMPARE {BF0} @{temp3} 30; ROTATE COMPARE {BF0} @{temp2} 30; ROTATE COMPARE {BF0} @{temp1} 30; ROTATE COMPARE {BF0} @{temp0} 30;</script><text>Animation backwards</text></jmolLink></jmol> | ||
==Collection of molecules== | ==Collection of molecules== | ||
Revision as of 03:34, 13 September 2019
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