User:Karsten Theis/Animation course

Animate a scene with Jmol

Load the scene and choose a look

Open and use your skills learned from the viewing guide to explore the scene.

1. Choose a background:

2. How, if it all, do you want to show the protein?

3. How do you want the opioid to look like?

4. Other choices:

Save some orientations

Every time you find an orientation (rotation, translation, zoom), click a different one of these links. You can restore the orientation by clicking on the link in the next section.

Transition between orientations

Select a transition speed:

Go to different views:

Animate between the four views:

Show the underlying commands

Dock a ligand

Click and drag on the ligand to move it. Alt-click and drag on the ligand to rotate it. Click and drag away from the ligand to adjust the view. To store each consecutive ligand position, consecutively click on the links below:

Recall ligand position

Clicking on the links below will restore the ligand position (scene0 is the original position in the binding pocket):

To animate, click below

Collection of molecules

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