Sandbox Reserved 1659

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== Structure ==
== Structure ==
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LntA is a small basic protein of 9.7 kDa. This protein is highly conserved in L. monocytogenes and is absent in almost all non-pathogenic Listeria strains (1). This characteristic suggests that lntA plays a key role in Listeria’s virulence. The acidic part of LntA is composed of aspartic acid (17,5% of LntA)) and the basic part is composed of lysine and arginine (18,6%).(Green Links) LntA is composed of 5 alpha-helix, three of them are long antiparallel helix and can be seen as the core of the protein. The two remaining helix stick out the core. The 3 first helix are named H1, H2 and H3. The 2 others are H4 and H5. (Green links) These two helix are less rigid than the three first, probably because they are bonded to the BAHD1. Furthermore, the Lysine 180 and 181 are placed on this H5 helix, and they are responsible for the ligation to BAHD1 so it can cause a conformational change. Many amino acids may be involved in the interaction of LntA with its ligand, such as BAHD1. A dilysine motif located in the elbow region of lntA at position 180/181 (green link) has proven to be essential for the interaction with the transcription factor BAHD1 (1). Indeed, when this motif is substituted by two aspartic acid amino acids (K180D/K181D by mutation of LntA), a local redistribution of the charges is observed and lntA is not able anymore to interact with BAHD1. (1) (green link).
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LntA is a small basic protein of 9.7 kDa. This protein is highly conserved in L. monocytogenes and is absent in almost all non-pathogenic Listeria strains (1). This characteristic suggests that lntA plays a key role in Listeria’s virulence. The acidic part of LntA is composed of aspartic acid (17,5% of LntA)) and the basic part is composed of lysine and arginine (18,6%).(Green Links) LntA is composed of 5 alpha-helix, three of them are long antiparallel helix and can be seen as the core of the protein. The two remaining helix stick out the core. The 3 first helix are named H1, H2 and H3. The 2 others are H4 and H5. (Green links) These two helix are less rigid than the three first, probably because they are bonded to the BAHD1. Furthermore, the Lysine 180 and 181 are placed on this H5 helix, and they are responsible for the ligation to BAHD1 so it can cause a conformational change. Many amino acids may be involved in the interaction of LntA with its ligand, such as BAHD1. A <scene name='86/868192/Dilysine/1'>dilysine motif located in the elbow region of lntA at position 180/181</scene> (green link) has proven to be essential for the interaction with the transcription factor BAHD1 (1). Indeed, when this motif is substituted by two aspartic acid amino acids (K180D/K181D by mutation of LntA), a local redistribution of the charges is observed and lntA is not able anymore to interact with BAHD1. (1) (green link).
Third patch has other charged residues which are likely to play a role in the interaction but they are less conserved so they might not be absolutely essential to the formation of the BAHD1-lntA complex.
Third patch has other charged residues which are likely to play a role in the interaction but they are less conserved so they might not be absolutely essential to the formation of the BAHD1-lntA complex.
This protein can also be stabilized by glycerol molecules because they are hydrophobic and it prevents hydrolyzation. (green link)
This protein can also be stabilized by glycerol molecules because they are hydrophobic and it prevents hydrolyzation. (green link)

Revision as of 17:39, 10 January 2021

This Sandbox is Reserved from 26/11/2020, through 26/11/2021 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1643 through Sandbox Reserved 1664.
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