This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Sandbox Reserved 1692

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 9: Line 9:
Here, I have the protein <scene name='89/892735/Protein_view_2/3'>with bound ligand </scene> using N->C coloring.
Here, I have the protein <scene name='89/892735/Protein_view_2/3'>with bound ligand </scene> using N->C coloring.
== Biological relevance and broader implications ==
== Biological relevance and broader implications ==
-
 
+
Gum Arabic (GA) is a representative protein of the family of arabinogalactan proteins (AGPs) and is produced in acacia trees in response to stress conditions, such as drought or wounds. GA has a variety of applications within the industrial world, including the food, cosmetic, and pharmaceutical industries, acting specifically as an emulsion stabilizer, emulsifier, and thickener in pharmaceutical settings.
== Important amino acids==
== Important amino acids==
Amino Acids <scene name='89/892735/Highlighting_amino_acids/2'>85, 150, 166, 170, 202, 220, 275, and 331</scene> provide important interactions for binding. The His105 side chain forms a hydrogen bond with His85 side chain, providing stabilizing assistance. <ref>PMID:34303708</ref>.
Amino Acids <scene name='89/892735/Highlighting_amino_acids/2'>85, 150, 166, 170, 202, 220, 275, and 331</scene> provide important interactions for binding. The His105 side chain forms a hydrogen bond with His85 side chain, providing stabilizing assistance. <ref>PMID:34303708</ref>.

Revision as of 14:09, 7 December 2021

This Sandbox is Reserved from 10/01/2021 through 01/01//2022 for use in Biochemistry taught by Bonnie Hall at Grand View University, Des Moines, USA. This reservation includes Sandbox Reserved 1690 through Sandbox Reserved 1699.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

Structure and Function of FoRham1

Structure of FoRham1

Drag the structure with the mouse to rotate

References

  1. ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
  3. ↑ Kondo T, Kichijo M, Maruta A, Nakaya M, Takenaka S, Arakawa T, Fushinobu S, Sakamoto T. Structural and functional analysis of gum arabic l-rhamnose-alpha-1,4-d-glucuronate lyase establishes a novel polysaccharide lyase family. J Biol Chem. 2021 Jul 22:101001. doi: 10.1016/j.jbc.2021.101001. PMID:34303708 doi:http://dx.doi.org/10.1016/j.jbc.2021.101001
Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox_Reserved_1692"
Personal tools