Sandbox Reserved 1767

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=== Autoinhibited Confirmation ===
=== Autoinhibited Confirmation ===
The first step of the signaling cascade is the dephosphorylation of Raf at Ser259. In the <scene name='95/952695/Autoinhibited_confirmation/3'>autoinhibited confirmation</scene>, Raf interacts with a 14-3-3 dimer due to the phosphate group present on Ser259. This interaction with 14-3-3 restrics Raf to the cytoplasm and inhibits Raf from binding with Ras due to steric clash. When GTP binds to MRAS, this triggers the SMP complex to form. Once the complex is formed, PP1C is brought into close proximity of Ras, leading to the dephosphorylation of Ser259. Once dephosphorylated, Raf is in the <scene name='95/952695/Non-inhibited_confirmation/6'>non-autoinhibited confirmation</scene>, allowing for the interaction of Ras and Raf, and the initiation of the signaling cascade.
The first step of the signaling cascade is the dephosphorylation of Raf at Ser259. In the <scene name='95/952695/Autoinhibited_confirmation/3'>autoinhibited confirmation</scene>, Raf interacts with a 14-3-3 dimer due to the phosphate group present on Ser259. This interaction with 14-3-3 restrics Raf to the cytoplasm and inhibits Raf from binding with Ras due to steric clash. When GTP binds to MRAS, this triggers the SMP complex to form. Once the complex is formed, PP1C is brought into close proximity of Ras, leading to the dephosphorylation of Ser259. Once dephosphorylated, Raf is in the <scene name='95/952695/Non-inhibited_confirmation/6'>non-autoinhibited confirmation</scene>, allowing for the interaction of Ras and Raf, and the initiation of the signaling cascade.
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=== Ras/Raf ===
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=== Switch I and Switch II ===
=== Switch I and Switch II ===
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SHOC2-PP1C-MRAS is a regulator of a cell proliferation pathway. Mutations in cell proliferation pathways are responsible for 25% of all cancers 1. If this cell proliferation pathway goes unmediated, rapid cell growth and division will occur; the leading cause of cancers is mutations in this pathway. Figure 1 shows the pathway SHOC2-PP1C-MRAS is part of. It is a receptor tyrosine kinase pathway 1. When the receptor binds, a phosphorylation causes a conformational change. This conformation change causes the phosphorylation of other residues. Eventually, this leads to the unbinding of GDP from MRAS and the binding of GTP to MRAS, causing a shift from the open to closed conformation of Switch I. <scene name='95/952693/Switch_i_gtp_bound/10'>SWI Closed Conformation</scene>
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SHOC2-PP1C-MRAS is a regulator of a cell proliferation pathway. Mutations in cell proliferation pathways are responsible for 25% of all cancers 1. If this cell proliferation pathway goes unmediated, rapid cell growth and division will occur; the leading cause of cancers is mutations in this pathway. Figure 1 shows the pathway SHOC2-PP1C-MRAS is part of. It is a receptor tyrosine kinase pathway 1. When the receptor binds, a phosphorylation causes a conformational change. This conformation change causes the phosphorylation of other residues. Eventually, this leads to the unbinding of GDP from MRAS and the binding of GTP to MRAS, causing a shift from the open to <scene name='95/952693/Switch_i_gtp_bound/10'> closed conformation of SWI.</scene>
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The Switch I region is made up of residues 42-48 of the MRAS domain. 1 These residues are crucial for the binding of MRAS, SHOC2, and PP1C. When GDP is bound to the MRAS domain, it is in the “open” conformation. <scene name='95/952693/Swi_open_conformation/3'> </scene> Since the gamma phosphate is not bound to GDP, there are no hydrogen bond interactions with the oxygens of the phosphate group- hence the open conformation. Figure 2 When GTP is bound to MRAS, it is in the closed conformation.
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<scene name='95/952693/Switch_i_gtp_bound/10'>SWI Closed Conformation</scene> The closed conformation allows for the binding of SHOC2 and PP1C. The open conformation of MRAS sterically clashes with the binding site of SHOC2, which is why the complex is not assembled when GDP is bound, as seen by the highlighted red region. <scene name='95/952693/Swi_open_conformation/3'> </scene> The only large-scale conformational change occurs in the MRAS subunit. SHOC2 only undergoes a 6° conformational change 1 when MRAS-GTP binds. <scene name='95/952693/Shoc2_gtp_bound_vs_gdp_bound/5'>SHOC2 GTP Bound (blue) vs. GDP Bound (purple)</scene> Since SHOC2 and PP1C do not undergo much conformational change, they are in an equilibrium of binding and unbinding until MRAS-GTP binds to SHOC2, and the complex is assembled.
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=== Ras/Raf ===
== Structure of Active Site ==
== Structure of Active Site ==

Revision as of 14:17, 3 April 2023

This Sandbox is Reserved from February 27 through August 31, 2023 for use in the course CH462 Biochemistry II taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1765 through Sandbox Reserved 1795.
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Contents

SHOC2-PP1C-MRAS

Caption for this structure

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Protopedia Resources

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</StructureSection>

References

  1. Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
  2. Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644

</StructureSection>

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