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Template:STRUCTURE 1m1j

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Revision as of 11:46, 17 February 2009

1m1j, resolution 2.70Å ()

Ligands:

, ,

Domains:

Fib_alpha, Fib_beta, Fib_gamma, FReD, 7tm_1

Related:

1ei3, 1fzc

Structural annotation:
Resources:	CATH : 1M1Ja00, 1M1Jb02, 1M1Jb01, 1M1Jb03, 1M1Jc01, 1M1Jc02, 1M1Jc03, 1M1Jd00, 1M1Je01, 1M1Je03, 1M1Je02, 1M1Jf01, 1M1Jf02, 1M1Jf03 InterPro : Ipr012290, Ipr014716, Ipr014814, Ipr002181, Ipr014715 Pfam : PF08702, PF00147 SCOP : d1m1ja_, d1m1jf1, d1m1jf2 UniProt : P14448, Q02020, O93568

Functional annotation:
Cellular component:	fibrinogen complex
Biological process:	signal transduction blood coagulation platelet activation protein polymerization
Molecular function:	protein binding, bridging receptor binding

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1m1j"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1m1j, resolution 2.70&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1m1j]], resolution 2.70&Aring; (<scene name='initialview01'>default scene</scene>)}}}
 |LIGAND= <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:SUGAR+(N-ACETYL-D-GLUCOSAMINE)'>NAG</scene>, <scene name='pdbligand=NDG:SUGAR+(N-ACETYL-D-GLUCOSAMINE)'>NDG</scene>
 |DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08702 Fib_alpha], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09389 Fib_beta], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam09395 Fib_gamma], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00087 FReD], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00001 7tm_1]</span>
@@ Line 9: / Line 9: @@
 |COMPONENT={{GO|id=GO:0005577 | text = fibrinogen complex}}
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jA00 1M1Ja00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jB02 1M1Jb02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jB01 1M1Jb01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jB03 1M1Jb03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jC01 1M1Jc01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jC02 1M1Jc02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jC03 1M1Jc03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jD00 1M1Jd00], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jE01 1M1Je01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jE03 1M1Je03], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jE02 1M1Je02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jF01 1M1Jf01], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jF02 1M1Jf02], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1m1jF03 1M1Jf03]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012290 Ipr012290], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014716 Ipr014716], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014814 Ipr014814], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002181 Ipr002181], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014715 Ipr014715]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF08702 PF08702], [http://pfam.sanger.ac.uk/family?acc=PF00147 PF00147]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=74369 d1m1ja_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=74377 d1m1jf1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=74378 d1m1jf2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P14448 P14448], [http://ca.expasy.org/cgi-bin/niceprot.pl?Q02020 Q02020], [http://ca.expasy.org/cgi-bin/niceprot.pl?O93568 O93568]</span>
+|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1m1j_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_1m1j_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1m1j_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>E [x]</text>
+<name>jmb_1m1j_E</name>
+<title>toggle chain E</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1m1j_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>F [x]</text>
+<name>jmb_1m1j_F</name>
+<title>toggle chain F</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>G [x]</text>
+<name>jmb_1m1j_G</name>
+<title>toggle chain G</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>H [x]</text>
+<name>jmb_1m1j_H</name>
+<title>toggle chain H</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>I [x]</text>
+<name>jmb_1m1j_I</name>
+<title>toggle chain I</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>J [x]</text>
+<name>jmb_1m1j_J</name>
+<title>toggle chain J</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1m1j

From Proteopedia

Revision as of 11:46, 17 February 2009

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