User:Eric Martz

From Proteopedia

Revision as of 16:30, 28 June 2008

Eric Martz

Professor Emeritus, University of Massachusetts, Amherst MA USA
emartz at microbio dot umass dot edu
martz.molviz.org

Some Proteopedia Pages to Which I've Contributed

Molecules: Topic Pages

• Major Histocompatibility Complex Class I
• Proton Channels, which includes an animated morph.
• Recoverin, a calcium-activated myristoyl switch
• User:Eric Martz/Nucleosomes (a protected page for lectures), which was copied into Nucleosomes so others can improve it.

Molecules: PDB Code-Titled Pages

• 2ic8 (green links in overview)
• 2rd0 Phosphatidylinositol kinase oncogene: I authored scenes similar to many of the figures from the publication.

Topic Pages: Lists of Other Pages

• About Macromolecular Structure
• Research Groups and Institutes
• Teaching Scenes, Tutorials, and Educators' Pages

Topic Pages - Structural Bioinformatics

• About Macromolecular Structure
• Amino Acids
• Asymmetric Unit UNIT CELL SCENE NOT WORKING
• Atomic coordinate file <- PDB file, PDB file format
• Biological Unit <- Quaternary structure
• Conservation, Evolutionary
• Eric Martz's Favorites
• Free R
• Highest impact structures of all time.
• Ligand
• Morphs NEEDS WORK
• NMR Ensembles of Models
• Personal favorites
• Protein Data Bank
• Quality assessment for molecular models
• R value
• Resolution
• Sites, Functional
• Standard Residues and Non-Standard Residues
• Temperature value <- B value, Disorder

Meta Pages

• Help:Copying FirstGlance Scenes into Proteopedia
• Help:Editing
• Help:Protected Pages
• Mugs and T-Shirts (I created these products and set up the non-profit store at cafepress.com/molviz4.)
• Proteopedia:About
• Proteopedia:Namespaces
• Proteopedia:Policy
• Proteopedia:Problems
• Proteopedia:Topic Pages
• Proteopedia:Wishlist

Templates

• Template:ColorKey_N2CRainbow

Workshops

• One-day courses in molecular visualization and structural bioinformatics for researchers and educators.

Principal Author or Architect of (Elsewhere):

• FirstGlance in Jmol, a general-purpose molecular visualization tool which has been adopted by Nature (see the 3D View links), the ConSurf Server, and other journals and structural bioinformatics servers. Available 2005-present.
• Visualization for the the ConSurf Server developed by Nir Ben-Tal, Fabian Glaser, Elana Erez and others, which colors amino acids by evolutionary conservation, completely automatically. Available 2002-present.
• Top Five 3D Molecular Visualization Technologies for the Rest Of Us. Page available 2007-present.
• MolviZ.Org with tutorials in Jmol and molecular visualization resources for educators and students. Included is a DNA Structure Tutorial started in 1996, and now (in collaboration with Angel Herráez) available in 5 languages.
• World Index of Molecular Visualization Resources. Available 2000-present.
• Atlas of Macromolecules. Available 2002-present.
• With Jaime Prilusky, the PDB Lite search interface for students and beginners to find published macromolecular models. Available 1998-present.
• An incomplete History of Macromolecular Visualization which includes a list of the earliest macromolecules solved by X-ray crystallography. Available 1997-present.
• molvis-list, founded in 1995 as the RasMol List. Maintained largely by Tim Driscoll/molvisions.com since 2004.

And in an earlier era

• Protein Explorer 1998-present.
• The RasMol Home Page founded 1996. See also RasMol.Org by Herbert Bernstein, available since 1999.

Personal Quicklinks

All Protected Pages

• Search for User:Eric Martz in User Namespace

Protected Sandbox Pages

• User:Eric Martz/Sandbox
• User:Eric Martz/Sandbox 2
• User:Eric Martz/liveConnect Test

Protected Topic Pages

• User:Eric Martz/Nucleosomes (cf. Nucleosomes)

Other Quicklinks

• Special:Wantedpages