Group:SMART:2010 Pingry SMART Team Models

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Revision as of 02:39, 8 March 2010

Return to 2010 SMART Team Page: 2010 Pingry SMART Team

General design guidelines

Helix color (blue): [128,255,255]

Sheet color (red): [255,128,128]

AdhD K249G/H255R double mutant and Self-assembly into hydrogels

Design script:

Select all

Backbone off

Wireframe off

Spacefill off

Cartoon off

Backbone 300

Color white

Select (253-260) or (230-241) or (190-198) or (157-165) or (131-144) or (98-112) or (68-78) or (40-53)

Color [128,255,255]

Select (118-122) or (149-153) or (174-177) or (201-205) or (244-249) or (22-25) or (57-61) or (86-91)

Color [255,128,128]

Select 249 and (sidechain or alpha)

Wireframe 250

Select 249 and sidechain

Color cpk

Select 249 and alpha

Color [0,0,255]

Select 255 and (sidechain or alpha)

Wireframe 250

Select 255 and sidechain

Color cpk

Select 255 and alpha

Color [0,0,255]

PDB ID: 1a80, 2,5-diketo-d-gluconic acid reductase with NADPH (wild-type)

PDB ID: 1m9h, Mutant 2,5-diketo-d-gluconic acid reductase with NADH (mutant)

PDB ID: 1k8c, Xylose reductase with NADP+

Select all

Cartoon off

Spacefill off

Backbone 300

Color white

Select hetero and not water

Wireframe 250

Color cpk

Select 27-41 or 54-68 or 89-104 or 146-160 or 172-183 or 200-210 or 255-266 or 277-286

Color [175,214,255]

Select 20-22 or 45-47 or 77-82 or 108-113 or 163-169 or 189-193 or 213-217 or 270-271

Color [255,171,187]

Select 274-280

Color yellow

Select 225-229

Color orange

select (227 or 276 or 280) and sidechain

wireframe 250

color [0,255,128]

select (274 or 275) and sidechain

wireframe 250

color [34,139,34]

PDB ID: 1mi3, Xylose reductase with NAD+

PDB ID: 1lwi, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with NADP+ cofactor

PDB ID: 1afs, Rat liver 3-alpha-hydroxysteroid dihydrodiol dehydrogenase with cofactor and testosterone