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Ribosomal protein S2
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{{STRUCTURE_3kc4| PDB=3kc4 | SIZE=300| SCENE=Ribosomal_protein_S2/Cv/1 |right|CAPTION=Ribosomal protein S2 (RPS2), [[3kc4]] }} | {{STRUCTURE_3kc4| PDB=3kc4 | SIZE=300| SCENE=Ribosomal_protein_S2/Cv/1 |right|CAPTION=Ribosomal protein S2 (RPS2), [[3kc4]] }} | ||
| - | [[Ribosomal protein S2]] (RPS2) is one of the 22 proteins which belong to the <scene name='Ribosomal_protein_S2/Cv/12'>small subunit</scene> of the [[ribosome]]. Its N-terminal is rich in Arg-Gly repeats and has two RGGF copies which are believed to be associated with nuclear localization and binding to RNA. In archaea the protein is called S2P (RPS2P). The images at the left and at the right correspond to one representative RPS2, ''i.e.'' the crystal structure of Ribosomal protein S2 from ''Escherichia coli'' ([[3kc4]]). | + | [[Ribosomal protein S2]] (RPS2) is one of the 22 proteins which belong to the <scene name='Ribosomal_protein_S2/Cv/12'>small subunit</scene> of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]]. Its N-terminal is rich in Arg-Gly repeats and has two RGGF copies which are believed to be associated with nuclear localization and binding to RNA. In archaea the protein is called S2P (RPS2P). The images at the left and at the right correspond to one representative RPS2, ''i.e.'' the crystal structure of Ribosomal protein S2 from ''Escherichia coli'' ([[3kc4]]). |
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Revision as of 08:19, 27 October 2010
Ribosomal protein S2 (RPS2) is one of the 22 proteins which belong to the of the bacterial ribosome. Its N-terminal is rich in Arg-Gly repeats and has two RGGF copies which are believed to be associated with nuclear localization and binding to RNA. In archaea the protein is called S2P (RPS2P). The images at the left and at the right correspond to one representative RPS2, i.e. the crystal structure of Ribosomal protein S2 from Escherichia coli (3kc4).
3D Structures of Ribosomal protein S2
S2
1vi5, 1vi6 – RPS2P – Archaeoglobus fulgidus
S2 in small ribosomal subunit
2zm6, 1n36, 1j5e - TtRPS2 in 30S ribosomal subunit+THX+16S RRNA – Thermus thermophilus
2vqe, 2vqf, 2uuc, 2e5l, 2uu9, 2uua, 2uub - TtRPS2 in 30S ribosomal subunit+16S RRNA+RNA fragment
3kc4 - EcRPS2 in 30S ribosomal subunit - Escherichia coli
3i1m, 3i1o, 3df1, 3df3, 2vho, 2vhp, 2avy, 2aw7, 1pnx - EcRPS2 in 30S ribosomal subunit+16S RRNA
1i94, 1fka - TtRPS2 in 30S ribosomal subunit+16S RRNA
1p87 - EcRPS2 in 30S ribosomal subunit+16S RRNA – Cryo-EM
3bbn - RPS2 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
S2 in small + large ribosomal subunit
1ml5 - EcRPS2 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM
S2 in small ribosomal subunit+ chain release factor
3mr8, 3ms0 – TtRPS2 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA
3d5a, 3d5c - TtRPS2 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA
2b64 - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1
2b9m - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2
2x9r, 2x9t, 2wh1, 2wh3 - TtRPS2 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA
3f1e, 3f1g - TtRPS2 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
S2 in small ribosomal subunit+tRNA+mRNA
2hgi - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet
2hgp, 2i2p, 2i2u - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA
2hgr - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA
1yl4 – TtRPS2 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator
1pns - EcRPS2 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA
1xnq, 1xnr- TtRPS2 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
S2 in small ribosomal subunit+A-site tRNA
2uxd, 2uxc - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA
1n32, 1n33 - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA
1n34 - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA
1xmo, 1xmq - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA
2uxb - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
S2 in small ribosomal subunit+P-site tRNA
3i8g - TtRPS2 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA
3i8h, 3i9b, 3i9d - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA
1ibk - TtRPS2 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA
2wwl - EcRPS2 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA
3i1q - EcRPS2 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA
3i1s, 3i1z, 3i21 - EcRPS2 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
2om7 – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment
S2 in small ribosomal subunit+A-site tRNA+P-site tRNA
1ibl, 1ibm - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
S2 in small ribosomal subunit+P-site tRNA+E-site tRNA
2ow8 - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA
2b9o - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA
2qnh - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA
2wdg, 2wdh, 2wdk, 2wdm - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe
S2 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA
2gy9, 2gyb - EcRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM
1jgo, 1jgp, 1jgq, 1gix - TtRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA
3e1a, 3e1c - EcRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
S2 in small ribosomal subunit + antibiotics
1i95 - TtRPS2 in 30S ribosomal subunit+16S RRNA+edeine
1i97 - TtRPS2 in 30S ribosomal subunit+16S RRNA+tetracycline
1hnw - TtRPS2 in 30S ribosomal subunit+16S RRNA+mRNA fragment+tetracycline
1hnx - TtRPS2 in 30S ribosomal subunit+16S RRNA+mRNA fragment+pactamycin
1hnz - TtRPS2 in 30S ribosomal subunit+16S RRNA+mRNA fragment+hygromycin B
1fjg - TtRPS2 in 30S ribosomal subunit+16S RRNA+mRNA fragment+streptomycin
2qbb, 2qb9 - EcRPS2 in 30S ribosomal subunit+16S RRNA+kasugamyin
2hhh - TtRPS2 in 30S ribosomal subunit+16S RRNA+kasugamyin
2f4v - TtRPS2 in 30S ribosomal subunit+16S RRNA+designed antibiotic
1vs5, 1vs7 - EcRPS2 in 30S ribosomal subunit+16S RRNA+gentamicin
2qan, 2qal - EcRPS2 in 30S ribosomal subunit+16S RRNA+neomycin
2qou, 2qow - EcRPS2 in 30S ribosomal subunit+16S RRNA+spectinomycin
2qoy, 2qp0 - EcRPS2 in 30S ribosomal subunit+16S RRNA+spectinomycin+neomycin
2z4k, 2z4m - EcRPS2 in 30S ribosomal subunit+16S RRNA+paromomycin
2j00, 2j02 - TtRPS2 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA
3knj, 3knh - TtRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin
3knl, 3knm, 3knn, 3kno - TtRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin
S2 in small ribosomal subunit + ribosome recycling factor
2qbd, 2qbf - EcRPS2 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor
2qbh, 2qbj - EcRPS2 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin
2v46, 2v48 - TtRPS2 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
S2 in small ribosomal subunit + elongation factor
2wri, 2wrk - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G
2wrn, 2wrq - TtRPS2 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4
3fic - TtRPS2 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A
3fih - EcRPS2 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU
3huw, 3huy - TtRPS2 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P
1s1h - RPS2 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast
S2 in small ribosomal subunit + translation initiation factor
1i96 - TtRPS2 in 30S ribosomal subunit+THX+IF3+16S RRNA
1hr0 - TtRPS2 in 30S ribosomal subunit+THX+IF+16S RRNA
S2 in small ribosomal subunit + various proteins
3jyv - TlRPS2 in 40S ribosomal subunit+RACK1+S19E+P-site tRNA – Thermomyces lanuginosus
3kiq, 3kis, 3kiu, 3kix - TtRPS2 in 30S ribosomal subunit+toxin RelE+16S RRNA
1voq, 1vos , 1vov, 1vox, 1voz - EcRPS2 in 30S ribosomal subunit+protein Y+16S RRNA
1x18 – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments
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