This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
Proteopedia:I3DC
From Proteopedia
(Difference between revisions)
m (Protected "Proteopedia:I3DC" [edit=sysop:move=sysop]) |
|||
| Line 1: | Line 1: | ||
__NOEDITSECTION__ | __NOEDITSECTION__ | ||
=== Acta Cryst D ''Acta Crystallographica Section D: Biological Crystallography'' === | === Acta Cryst D ''Acta Crystallographica Section D: Biological Crystallography'' === | ||
| + | http://proteopedia.org/logos/small/Acta_Cryst_D.png | ||
* [[Journal:Acta Cryst D:1|Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations]], Yechun Xu, Minjun Li, Harry Greenblatt, Wuyan Chen, Aviv Paz, Orly Dym, Yoav Peleg, Tiantian Chen, Xu Shen, Jianhua He, Hualiang Jiang, Israel Silman & Joel L Sussman [http://dx.doi.org/10.1107/S0907444911047251 http://dx.doi.org/10.1107/S0907444911047251] | * [[Journal:Acta Cryst D:1|Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations]], Yechun Xu, Minjun Li, Harry Greenblatt, Wuyan Chen, Aviv Paz, Orly Dym, Yoav Peleg, Tiantian Chen, Xu Shen, Jianhua He, Hualiang Jiang, Israel Silman & Joel L Sussman [http://dx.doi.org/10.1107/S0907444911047251 http://dx.doi.org/10.1107/S0907444911047251] | ||
=== Acta Cryst F ''Acta Crystallographica Section F: Structural Biology and Crystallization Communications'' === | === Acta Cryst F ''Acta Crystallographica Section F: Structural Biology and Crystallization Communications'' === | ||
| + | http://proteopedia.org/logos/small/Acta_Cryst_F.png | ||
* [[Journal:Acta Cryst F:1|Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae]], Harry M. Greenblatt, Tamara C. Otto, Melanie G. Kirkpatrick, Elena Kovaleva, Susan Brown, George Buchman, Douglas M. Cerasoli and Joel L. Sussman [http://dx.doi.org/10.1107/S1744309112003326 http://dx.doi.org/10.1107/S1744309112003326] | * [[Journal:Acta Cryst F:1|Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae]], Harry M. Greenblatt, Tamara C. Otto, Melanie G. Kirkpatrick, Elena Kovaleva, Susan Brown, George Buchman, Douglas M. Cerasoli and Joel L. Sussman [http://dx.doi.org/10.1107/S1744309112003326 http://dx.doi.org/10.1107/S1744309112003326] | ||
=== Cell '' '' === | === Cell '' '' === | ||
| + | http://proteopedia.org/logos/small/Cell.png | ||
* [[Journal:Cell:1|Structural linkage between ligand discrimination and receptor activation by type I interferons]], Christoph Thomas, Ignacio Moraga, Doron Levin, Peter O. Krutzik, Yulia Podoplelova, Angelica Trejo, Choongho Lee, Ganit Yarden, Susan E. Vleck, Jeffrey S. Glenn, Garry P. Nolan, Jacob Piehler, Gideon Schreiber, K. Christopher Garcia [http://dx.doi.org/10.1016/j.cell.2011.06.048 http://dx.doi.org/10.1016/j.cell.2011.06.048] | * [[Journal:Cell:1|Structural linkage between ligand discrimination and receptor activation by type I interferons]], Christoph Thomas, Ignacio Moraga, Doron Levin, Peter O. Krutzik, Yulia Podoplelova, Angelica Trejo, Choongho Lee, Ganit Yarden, Susan E. Vleck, Jeffrey S. Glenn, Garry P. Nolan, Jacob Piehler, Gideon Schreiber, K. Christopher Garcia [http://dx.doi.org/10.1016/j.cell.2011.06.048 http://dx.doi.org/10.1016/j.cell.2011.06.048] | ||
=== JBIC ''Journal of Biological Inorganic Chemistry'' === | === JBIC ''Journal of Biological Inorganic Chemistry'' === | ||
| + | http://proteopedia.org/logos/small/JBIC.png | ||
* [[Journal:JBIC:1|Crystal structure of the zinc, cobalt and iron containing adenylate kinase from ''Desulfovibrio gigas'': a novel metal containing adenylate kinase from Gram-negative bacteria]], A. Mukhopadhyay, A.V. Kladova, S.A. Bursakov, O. Yu. Gavel, J.J. Calvete, V.L. Shnyrov, I. Moura, J.J.G. Moura, M.J. Romão, J. Trincão [http://dx.doi.org/10.1007/s00775-010-0700-8 http://dx.doi.org/10.1007/s00775-010-0700-8] | * [[Journal:JBIC:1|Crystal structure of the zinc, cobalt and iron containing adenylate kinase from ''Desulfovibrio gigas'': a novel metal containing adenylate kinase from Gram-negative bacteria]], A. Mukhopadhyay, A.V. Kladova, S.A. Bursakov, O. Yu. Gavel, J.J. Calvete, V.L. Shnyrov, I. Moura, J.J.G. Moura, M.J. Romão, J. Trincão [http://dx.doi.org/10.1007/s00775-010-0700-8 http://dx.doi.org/10.1007/s00775-010-0700-8] | ||
* [[Journal:JBIC:2|Structure of Anticancer Ruthenium Half-Sandwich Complex Bound to Glycogen Synthase Kinase 3ß]], G. Atilla-Gocumen, L. Di Costanzo, E. Meggers [http://dx.doi.org/10.1007/s00775-010-0699-x http://dx.doi.org/10.1007/s00775-010-0699-x] | * [[Journal:JBIC:2|Structure of Anticancer Ruthenium Half-Sandwich Complex Bound to Glycogen Synthase Kinase 3ß]], G. Atilla-Gocumen, L. Di Costanzo, E. Meggers [http://dx.doi.org/10.1007/s00775-010-0699-x http://dx.doi.org/10.1007/s00775-010-0699-x] | ||
| Line 31: | Line 35: | ||
* [[Journal:JSB:1|Structural and functional insights into a dodecameric molecular machine – The RuvBL1/RuvBL2 complex]], Sabine Gorynia, Tiago M. Bandeiras, Filipa G. Pinho, Colin E. McVey, Clemens Vonrhein, Adam Round, Dmitri I. Svergun, Peter Donner, Pedro M. Matias and Maria Arménia Carrondo [http://www.ncbi.nlm.nih.gov/pubmed/21933716 http://www.ncbi.nlm.nih.gov/pubmed/21933716] | * [[Journal:JSB:1|Structural and functional insights into a dodecameric molecular machine – The RuvBL1/RuvBL2 complex]], Sabine Gorynia, Tiago M. Bandeiras, Filipa G. Pinho, Colin E. McVey, Clemens Vonrhein, Adam Round, Dmitri I. Svergun, Peter Donner, Pedro M. Matias and Maria Arménia Carrondo [http://www.ncbi.nlm.nih.gov/pubmed/21933716 http://www.ncbi.nlm.nih.gov/pubmed/21933716] | ||
=== PLoS ONE '' '' === | === PLoS ONE '' '' === | ||
| + | http://proteopedia.org/logos/small/PLoS_ONE.png | ||
* [[Journal:PLoS ONE:1|ANTIVIRAL ACTIVITY of 3(2H)- and 6-CHLORO-3(2H)-ISOFLAVENES AGAINST HIGHLY DIVERGED, NEUROVIRULENT VACCINE-DERIVED, TYPE 2 POLIOVIRUS SEWAGE ISOLATES]], Lester M. Shulman, Danit Sofer, Yossi Manor, Ella Mendelson, Jean Balanant, Anna Laura Salvati, Francis Delpeyroux, Lucia Fiore [http://dx.doi.org/10.1371/journal.pone.0018360 http://dx.doi.org/10.1371/journal.pone.0018360] | * [[Journal:PLoS ONE:1|ANTIVIRAL ACTIVITY of 3(2H)- and 6-CHLORO-3(2H)-ISOFLAVENES AGAINST HIGHLY DIVERGED, NEUROVIRULENT VACCINE-DERIVED, TYPE 2 POLIOVIRUS SEWAGE ISOLATES]], Lester M. Shulman, Danit Sofer, Yossi Manor, Ella Mendelson, Jean Balanant, Anna Laura Salvati, Francis Delpeyroux, Lucia Fiore [http://dx.doi.org/10.1371/journal.pone.0018360 http://dx.doi.org/10.1371/journal.pone.0018360] | ||
* [[Journal:PLoS ONE:2|Structural Basis of Enzymatic Activity for the Ferulic Acid Decarboxylase (FADase) from Enterobacter sp. Px6-4]], Wen Gu, Jinkui Yang, Zhiyong Lou, Lianming Liang, Yuna Sun, Jingwen Huang, Xuemei Li, Yi Cao, Zhaohui Meng, Ke-Qin Zhang [http://www.ncbi.nlm.nih.gov/pubmed/21283705 http://www.ncbi.nlm.nih.gov/pubmed/21283705] | * [[Journal:PLoS ONE:2|Structural Basis of Enzymatic Activity for the Ferulic Acid Decarboxylase (FADase) from Enterobacter sp. Px6-4]], Wen Gu, Jinkui Yang, Zhiyong Lou, Lianming Liang, Yuna Sun, Jingwen Huang, Xuemei Li, Yi Cao, Zhaohui Meng, Ke-Qin Zhang [http://www.ncbi.nlm.nih.gov/pubmed/21283705 http://www.ncbi.nlm.nih.gov/pubmed/21283705] | ||
Revision as of 11:12, 25 June 2012
Acta Cryst D Acta Crystallographica Section D: Biological Crystallography
- Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations, Yechun Xu, Minjun Li, Harry Greenblatt, Wuyan Chen, Aviv Paz, Orly Dym, Yoav Peleg, Tiantian Chen, Xu Shen, Jianhua He, Hualiang Jiang, Israel Silman & Joel L Sussman http://dx.doi.org/10.1107/S0907444911047251
Acta Cryst F Acta Crystallographica Section F: Structural Biology and Crystallization Communications
- Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae, Harry M. Greenblatt, Tamara C. Otto, Melanie G. Kirkpatrick, Elena Kovaleva, Susan Brown, George Buchman, Douglas M. Cerasoli and Joel L. Sussman http://dx.doi.org/10.1107/S1744309112003326
Cell
- Structural linkage between ligand discrimination and receptor activation by type I interferons, Christoph Thomas, Ignacio Moraga, Doron Levin, Peter O. Krutzik, Yulia Podoplelova, Angelica Trejo, Choongho Lee, Ganit Yarden, Susan E. Vleck, Jeffrey S. Glenn, Garry P. Nolan, Jacob Piehler, Gideon Schreiber, K. Christopher Garcia http://dx.doi.org/10.1016/j.cell.2011.06.048
JBIC Journal of Biological Inorganic Chemistry
- Crystal structure of the zinc, cobalt and iron containing adenylate kinase from Desulfovibrio gigas: a novel metal containing adenylate kinase from Gram-negative bacteria, A. Mukhopadhyay, A.V. Kladova, S.A. Bursakov, O. Yu. Gavel, J.J. Calvete, V.L. Shnyrov, I. Moura, J.J.G. Moura, M.J. Romão, J. Trincão http://dx.doi.org/10.1007/s00775-010-0700-8
- Structure of Anticancer Ruthenium Half-Sandwich Complex Bound to Glycogen Synthase Kinase 3ß, G. Atilla-Gocumen, L. Di Costanzo, E. Meggers http://dx.doi.org/10.1007/s00775-010-0699-x
- Structural characterization of human S100A16, a low-affinity calcium binder, Elena Babini • Ivano Bertini • Valentina Borsi • Vito Calderone • Xiaoyu Hu • Claudio Luchinat • Giacomo Parigi http://dx.doi.org/10.1007/s00775-010-0721-3
- Bacterial ferrochelatase turns human: Tyr13 determines the apparent metal specificity of Bacillus subtilis ferrochelatase, Mattias D. Hansson • Tobias Karlberg • Christopher A. G. So ̈derberg • Sreekanth Rajan • Martin J. Warren • Salam Al-Karadaghi • Stephen E. J. Rigby • Mats Hansson http://dx.doi.org/10.1007/s00775-010-0720-4
- A Hyperactive Cobalt-Substituted Extradiol-Cleaving Catechol Dioxygenase, Andrew J. Fielding, Elena G. Kovaleva, Erik R. Farquhar, John D. Lipscomb and Lawrence Que http://dx.doi.org/10.1007/s00775-010-0732-0
- Sco Proteins are Involved in Electron Transfer Processes, Lucia Banci, Ivano Bertini, Simone Ciofi-Baffoni, Tatiana Kozyreva, Mirko Mori and Shenlin Wang http://dx.doi.org/10.1007/s00775-010-0735-x
- Structural and kinetic studies of imidazole binding to two members of the cytochrome c6 family reveal an important role for a conserved heme pocket residue, Badri S. Rajagopal, Michael T. Wilson, Derek S. Bendall, Christopher J. Howe and Jonathan A.R. Worrall http://dx.doi.org/10.1007/s00775-011-0758-y
- A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification, Jotaro Igarashi, Kazuo Kobayashi and Ariki Matsuoka http://dx.doi.org/10.1007/s00775-011-0761-3
- Protein and metal cluster structure of the wheat metallothionein domain γ-Ec-1. The second part of the puzzle., Jens Loebus, Estevão A. Peroza, Nancy Blüthgen, Thomas Fox, Wolfram Meyer Klaucke, Oliver Zerbe and Eva Freisinger http://dx.doi.org/10.1007/s00775-011-0770-2
- Crystal structures of the all cysteinyl coordinated D14C variant of Pyrococcus furiosus ferredoxin: [4Fe-4S] <-> [3Fe-4S] cluster conversion, Monika Nøhr Løvgreen, Maja Martic, Michael S. Windahl, Hans E. M. Christensen and Pernille Harris http://dx.doi.org/10.1007/s00775-011-0778-7
- A Cryo-Crystallographic Time Course for Peroxide Reduction by Rubrerythrin from Pyrococcus furiosus, Bret Dillard, Jonathan Demick, Michael Adams and William Lanzilotta http://dx.doi.org/10.1007/s00775-011-0795-6
- ISC-like [2Fe-2S] ferredoxin (FdxB) dimer from Pseudomonas putida JCM 20004: Structural and electron nuclear double resonance characterization, Toshio Iwasaki, Reinhard Kappl, Gerhard Bracic, Nobutaka Shimizu, Daijiro Ohmori and Takashi Kumasaka http://dx.doi.org/10.1007/s00775-011-0793-8
- N-Butylisocyanide Oxidation at the [NiFe4S4OHx]-cluster of CO Dehydrogenase, Jae-Hun Jeoung and Holger Dobbek http://dx.doi.org/10.1007/s00775-011-0839-y
- Multifaceted SlyD from Helicobacter pylori: implication in [NiFe] hydrogenase maturation, Tianfan Cheng, Hongyan Li, Wei Xia and Hongzhe Sun http://dx.doi.org/10.1007/s00775-011-0855-y
- Potent Inhibition of Dinuclear Zinc(II) Peptidase, an Aminopeptidase from Aeromonas proteolytica, by 8-Quinolinol Derivatives: Inhibitor Design Based on Zn2+ Fluorophores, Kinetic, and X-ray Crystallographic Study, Kengo Hanaya, Miho Suetsugu, Shinya Saijo, Ichiro Yamato, and Shin Aoki http://dx.doi.org/10.1007/s00775-012-0873-4
- Laue Crystal Structure of Shewanella oneidensis Cytochrome c Nitrite Reductase from a High-yield Expression System, Matthew Youngblut, Evan T. Judd, Vukica Srajer, Bilal Sayyed, Tyler Goelzer, Sean J. Elliott, Marius Schmidt and A. Andrew Pacheco http://dx.doi.org/10.1007/s00775-012-0885-0
JMB Journal of Molecular Biology
- Cyt1Aa Toxin: High Resolution Structure Reveals Implications for its Membrane-Perforating Function, Cohen S, Albeck S, Ben-Dov E, Cahan R, Firer M, Zaritsky A, Dym O. http://www.ncbi.nlm.nih.gov/pubmed/21959261
- Catalytic versatility and backups in enzyme active sites: The case of serum paraoxanase 1, Moshe Ben-David, Mikael Elias, Jean-Jacques Filippi, Elisabet Dunach, Israel Silman, Joel Sussman and Dan Tawfik, PhD http://dx.doi.org/10.1016/j.jmb.2012.02.042
JMedChem Journal of Medicinal Chemistry
- Structure of estradiol metal chelate and estrogen receptor complex: The basis for designing a new class of SERMs, Min-Jun Li, Harry M. Greenblatt, Orly Dym, Shira Albeck, Adi Pais, Chidambaram Gunanathan, David Milstein, Hadassa Degani, and Joel L. Sussman http://www.ncbi.nlm.nih.gov/pubmed/21473635
JSB Journal of Structural Biology
- Structural and functional insights into a dodecameric molecular machine – The RuvBL1/RuvBL2 complex, Sabine Gorynia, Tiago M. Bandeiras, Filipa G. Pinho, Colin E. McVey, Clemens Vonrhein, Adam Round, Dmitri I. Svergun, Peter Donner, Pedro M. Matias and Maria Arménia Carrondo http://www.ncbi.nlm.nih.gov/pubmed/21933716
PLoS ONE
- ANTIVIRAL ACTIVITY of 3(2H)- and 6-CHLORO-3(2H)-ISOFLAVENES AGAINST HIGHLY DIVERGED, NEUROVIRULENT VACCINE-DERIVED, TYPE 2 POLIOVIRUS SEWAGE ISOLATES, Lester M. Shulman, Danit Sofer, Yossi Manor, Ella Mendelson, Jean Balanant, Anna Laura Salvati, Francis Delpeyroux, Lucia Fiore http://dx.doi.org/10.1371/journal.pone.0018360
- Structural Basis of Enzymatic Activity for the Ferulic Acid Decarboxylase (FADase) from Enterobacter sp. Px6-4, Wen Gu, Jinkui Yang, Zhiyong Lou, Lianming Liang, Yuna Sun, Jingwen Huang, Xuemei Li, Yi Cao, Zhaohui Meng, Ke-Qin Zhang http://www.ncbi.nlm.nih.gov/pubmed/21283705
