User:Wayne Decatur

From Proteopedia

Revision as of 16:24, 7 November 2012

Wayne Decatur

Postdoctoral Research Associate in the Department of Molecular, Cellular and Biomedical Sciences at the University of New Hampshire.
Member of the Proteopedia Editorial Board.

Interests:
small RNAs and their associated ribonucleoprotein complexes; the Ribosome; RNA modification; catalytic RNAs; homing endonucleases, group I introns; leucine-rich repeats; hormones and their receptors.

Wayne's page on the Sower Lab site

Wayne's publications listed at the the U.S. National Library of Medicine's PubMed database

email:

Some Proteopedia Pages to Which I've Contributed

Molecules: Topic Pages

• The Ribosome
• Large Ribosomal Subunit of Haloarcula marismortui
• Interactions between Antibiotics and the Ribosome
• Azithromycin bound to the Large Ribosomal Subunit of Haloarcula marismortui
• Suppression of RNA Silencing by Viruses
• Plant Viral Protein p19 Suppression of RNA Silencing
• Tomato aspermy virus protein 2b Suppression of RNA Silencing
• Flock house virus B2 protein Suppression of RNA Silencing
• Green Fluorescent Protein
• DEAD-box helicase protein Vasa
• Swi2/Snf2 protein RapA
• Mfd (TRCF, transcription-repair coupling factor)
• UvrA-UvrB interaction domains complex
• DExD/H-box RNA-dependent ATPase DDX19 in the open and closed cleft conformation
• C-terminal domain of the DExD/H-box RNA-dependent ATPase Dbp5
• RecG in complex with a synthetic three-way DNA junction resembling a stalled replication fork
• Escherichia coli LepA, the ribosomal back translocase
• The Pore Forming Toxin, α-hemolysin
• CED-4 Apoptosome
• The Glutamate Receptor (GluA2)
• Luciferase
• Citrate Synthase
• Lamprey Variable Lymphocyte Receptor
• Leucine-Rich Repeat Proteins
• Toll-like Receptors
• Human Follicle-Stimulating Hormone Complexed with its Receptor
• G protein-coupled receptor
• Forkhead box protein M1

Topic Pages - Structural Bioinformatics

• About Macromolecular Structure
• Cation-pi interactions
• Complexes
• Cystine
• Getting Unremediated PDB Files
• Net charge
• Interface analysis servers
• Isoelectric point
• Standard Residues and Non-Standard Residues

Topic Pages - Education

• Teaching Strategies Using Proteopedia
• Teaching Scenes, Tutorials, and Educators' Pages
• High school teachers' resources

Meta Pages

• Help:Editing
• Proteopedia:How to Make a Page
• Proteopedia:About
• Proteopedia:Policy
• Proteopedia:Facebook
• Proteopedia:Twitter
• Jmol
• DRuMS
• Wanted pages
• Pages needing expansion‎
• Pages needing improvement‎

Workshops, Lectures, and Seminars

• UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Workshop Session Fall Semester (November 8th) 2012
• UNH BIOCHEM833 Structural Analysis for Non-Structural Biologists Introductory Lecture Fall Semester (October 25th) 2012
• Workshop for the NASCE Meeting at the University of Michigan, Ann Arbor, MI July 13 2011
• Workshop for CME at the University of New Hampshire, Durham, NH March 11 2011
• Seminar at the University of New Hampshire, Durham, NH Feb 1st 2011
• Biochem642 Molecular Visualization 2010 Fall Sessions
• Biochem642 Molecular Visualization 2009 Fall Sessions
• Proteopedia Work Session for Chem 791A-Biomolecular Structure

Personal Quicklinks

All Protected Pages

• Search for User:Wayne Decatur in User Namespace

Files Uploaded

• Files Uploaded by Wayne Decatur

Sandboxes

• Sandbox1rpu working out configuration&isosurfaces&dots problems
• Sandbox2hvy test for dots in another file
• Sandbox3pla
• Sandbox CsrA
• Sandbox TestMultiSurface

Protected Sandbox Pages

• My Protected Sandbox Pages

Protected Topic Pages

• User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit
• User:Wayne_Decatur/Haloarcula Large Ribosomal Subunit With Azithromycin
• User:Wayne Decatur/Interactions between Antibiotics and the Ribosome
• User:Wayne Decatur/Suppression of RNA Silencing by Viruses
• User:Wayne Decatur/Plant Viral Protein p19 Suppression of RNA Silencing
• User:Wayne Decatur/Tomato aspermy virus protein 2b Suppression of RNA Silencing
• User:Wayne Decatur/Flock house virus B2 protein Suppression of RNA Silencing
• User:Wayne_Decatur/kink-turn motif
• User:Wayne Decatur/Teaching Proteopedia
• User:Wayne Decatur/Editing Getting Unremediated PDB Files
• User:Wayne Decatur/Moving Components or Parts of Structures
• User:Wayne Decatur/Generate Unfolded Structures
• User:Wayne Decatur/Alter Disulfide Bonds in a Structure
• User:Wayne Decatur/Homology Modeling
• User:Wayne Decatur/Sequence analysis tools
• User:Wayne Decatur/Structure analysis tools
• User:Wayne Decatur/Molecular modeling tools
• User:Wayne Decatur/BioWikis
• User:Wayne Decatur/I-Ppo Morph Methods
• User:Wayne Decatur/3kg2 Morph Methods
• User:Wayne Decatur/3fpn Morph methods
• User:Wayne Decatur/3ewsSLASH3g0h Morph methods
• User:Wayne Decatur/humanaGal3hg2toothers morph methods
• User:Wayne Decatur/1cts to 2cts (citrate synthase) morph methods
• User:Wayne Decatur/1ig8 to 3b8a (hexokinase) morph methods

Templates

• My Templates

Help

• Proteopedia:Problems
• Jmol Command Reference Manual for advanced scene authoring.
• Jmol Wiki

Useful Resources

• Polyview-3D
• Jena3D Viewer

Wikitext help

• URLS in external links has the codes for using characters that aren't A-Z a-z 0-9 ._\/~%-+&#?!=()@ in links
• Guide to Wikitext Markup Language (wiki code)
• How to edit illustrates use of nowiki and pre tags.
• Wikitext quick cheat sheet also has how to make link to categories, too
• Categories can be linked to with colon in front
• HTML in wikitext
• Allows cropping of images, in addition to annotating.
• WikiTable Markup Guide
• Editing Wikitext/Tables
• Images: linking to articles using wikitext