General Information

Figure 1. A cartoon image of chorismate synthase.

Scientific Name: Aquifex aeolicus

Genus: Aquifex

Gene: Aroc

Formula weight: 43494.9 Da

Classification: Lyase

Length: 388 residues

Isoelectric point: 5.5

Chains: A,B,C,D

Contagious diseases are increasingly becoming a major public health issue. The shikimate pathway is often used for the advancement of antimicrobial mixures to fight against these diseases. This process only takes place in prokaryotes, fungi and plants. Chorismate synthase is the enzyme that is used in the shikimate pathway, which catalyzes the coversion of phosphoenol pyruvate to chorismate. Chorismate Synthase is an enzyme part of the lyase family. Studying this enzyme and the roles that it plays in many diseases, inhibition of this reaction can lead to oral treatment for infectious diseases and further growth. This enzyme is responsible for catalyzing the following reversible reaction:

5-enolpyruvylshikimate-3-phosphate <--> Chorismate + Phosphate.

Structural Content

Figure 2. This image is representative of the sequence of chorismate synthase.

Chorismate synthase is a homo 4-mer structure, which is composed of four identical monomer subunits. The tetramer crystal structure of chorismate synthase was solved at 2.0 Å using the multiwavelength anomalous dispersion (MAD) method. Each monomer within the structure has a β-α-β fold motif. One of the four monomers differs in structure slight close to the active site. This difference makes the active site a lot more accessible, making this monomer an “open” conformation. The monomer structure is composed of 35% (17 helices) and 18% (21 strands).

All of the beta sheets within each monomer run anti-parallel with one another. Helices are divided into two categories: alpha helices and 3/10 helices. In the structure there are eleven alpha helices and there are six 3/10 helices. The image to the right displays the sequence of chorismate synthase. We can examine the two structures, chorismate synthase and with mycobacterium tuberculosis and FMN bound.

Mechanism

Below is the proposed mechanism for the enzyme chorismate synthase. Since chorismate synthase is part of the lyase family, there will be an elimination reaction with a newly formed double bond. A very important cofactor is needed, Flavin Mononucleotide (FMN), when it is reduced the reaction is able to take place. The predicted model is that protonates the monoanionic reduced FMN and then protonates the leaving inorganic phosphate group of the substrate. This is consider to be the , where all of the catalytic events partake. Based on current studies, FMN comes in and is protonated immediately by HIS 106 making FMNH2 and leaving. His 17 then protonates the leaving phosphate group to allow for the elimination to be completed. To finish off the reaction, the electrons are shifted around to make a double bond that is necessary for the synthesis of aromatic amino acids. The aromatic amino acids that are form are tyrosine, tyrptophan, and phenylalanine; because of the double bond being formed within the six-membered ring.

Figure 3. The main mechanism of chorismate synthase involving HIS 17.

If we examine the image above we can see that FMN gets reduced and the phosphate group that is on carbon number 3 within the cyclic structure is removed and replaced by a double bond between carbon 2 and 3.

This is a representation of the two essential amino acids sites, HIS 17 and HIS 106.

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