Highlighted Proteins of Lyme Disease

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<p>[[Image:BorreliaGeneExpressionCycle.png|500px|right|thumb|<b>Figure 1: Abundance of Highlighted Proteins Over <i>Borrelia</i> Life Cycle.</b>]]
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<StructureSection load='1ggq' size='350' side='right' caption='' scene=''>
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[[Image:BorreliaGeneExpressionCycle.png|500px|right|thumb|<b>Figure 1: Abundance of Highlighted Proteins Over <i>Borrelia</i> Life Cycle.</b>]]
[http://en.wikipedia.org/wiki/Lyme_disease Lyme disease] is caused by three species of bacteria belonging to the genus <i>Borrelia</i>.<ref>PMID: 7043737</ref><ref>PMID: 6828119 </ref> <i>Borrelia burgdorferi</i>, an obligate parasite, is the most common cause of the disease in the United States and is transmitted via hard-bodied ticks of the [http://en.wikipedia.org/wiki/Ixodidae <i>Ixodidae</i>] family, commonly known as the blacklegged or deer ticks. <i>Borrelia</i> spirochetes are motile, helical bacteria whose cell membranes have many exposed, surface lipoproteins that are involved in both the pathogenesis and life cycle of the parasite. Two predominant groups of the surface lipoproteins present are classified as outer surface proteins (Osps), which have been characterized as Osps A through F, and the variable major protein-like sequence expressed (VlsE). Both of these groups of outer surface proteins play important roles in both the pathogenesis and life cycle of <i>Borrelia</i> as well as roles in eliciting an immune response of the host organism (Figure 1).<ref name="connolly">PMID: 15864264</ref>
[http://en.wikipedia.org/wiki/Lyme_disease Lyme disease] is caused by three species of bacteria belonging to the genus <i>Borrelia</i>.<ref>PMID: 7043737</ref><ref>PMID: 6828119 </ref> <i>Borrelia burgdorferi</i>, an obligate parasite, is the most common cause of the disease in the United States and is transmitted via hard-bodied ticks of the [http://en.wikipedia.org/wiki/Ixodidae <i>Ixodidae</i>] family, commonly known as the blacklegged or deer ticks. <i>Borrelia</i> spirochetes are motile, helical bacteria whose cell membranes have many exposed, surface lipoproteins that are involved in both the pathogenesis and life cycle of the parasite. Two predominant groups of the surface lipoproteins present are classified as outer surface proteins (Osps), which have been characterized as Osps A through F, and the variable major protein-like sequence expressed (VlsE). Both of these groups of outer surface proteins play important roles in both the pathogenesis and life cycle of <i>Borrelia</i> as well as roles in eliciting an immune response of the host organism (Figure 1).<ref name="connolly">PMID: 15864264</ref>
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<h3>Structure of OspC</h3>
<h3>Structure of OspC</h3>
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{{STRUCTURE_1ggq| PDB=1ggq | SCENE=Studio:G4SecL04/Dimer_with_mg/1 }}
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<!-- {{STRUCTURE_1ggq| PDB=1ggq | SCENE=Studio:G4SecL04/Dimer_with_mg/1 }} -->
The OspC three-dimensional model presented to the right is the <i>B. burgdorferi</i> B31 strain (residues 38-201) - also known as the oMG A strain. This is one of the four invasive oMGs that are responsible for systematic Lyme disease in mammalian hosts. In crystal structure, OspC exists as a dimer that coordinates a divalent ion, modeled here as magnesium. Each OspC subunit is predominantly helical, consisting of five parallel
The OspC three-dimensional model presented to the right is the <i>B. burgdorferi</i> B31 strain (residues 38-201) - also known as the oMG A strain. This is one of the four invasive oMGs that are responsible for systematic Lyme disease in mammalian hosts. In crystal structure, OspC exists as a dimer that coordinates a divalent ion, modeled here as magnesium. Each OspC subunit is predominantly helical, consisting of five parallel
<scene name='Studio:G4SecL04/Helix_blue_in_ribbon/1'> α-helices </scene>
<scene name='Studio:G4SecL04/Helix_blue_in_ribbon/1'> α-helices </scene>
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<h3>Structure of the OspB-H6831 Complex</h3>
<h3>Structure of the OspB-H6831 Complex</h3>
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<table width='450' align='left' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><Structure load='1RJL' size='400' frame='true' align='center' scene='Studio:G1SecL01/1/10' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''Figure 6: OspB-H6831 Complex''' (<scene name='Studio:G1SecL01/1/10'>Initial Scene</scene>)<br>
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<table width='450' align='left' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'>
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<!--
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<Structure load='1RJL' size='400' frame='true' align='center' scene='Studio:G1SecL01/1/10' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''Figure 6: OspB-H6831 Complex''' (<scene name='Studio:G1SecL01/1/10'>Initial Scene</scene>)<br> -->
<scene name='Studio:G1SecL01/1/11'>OspB</scene>''':''' <scene name='Studio:G1SecL01/1/31'>Loop 1</scene> <scene name='Studio:G1SecL01/1/32'>(w/ His 52)</scene> ·· <scene name='Studio:G1SecL01/1/33'>Loop 2</scene> ·· <scene name='Studio:G1SecL01/1/34'>Lysine 253</scene> <scene name='Studio:G1SecL01/1/35'>(CPK coloring)</scene> ·· <scene name='Studio:G1SecL01/1/36'>Loop 3</scene> <br>
<scene name='Studio:G1SecL01/1/11'>OspB</scene>''':''' <scene name='Studio:G1SecL01/1/31'>Loop 1</scene> <scene name='Studio:G1SecL01/1/32'>(w/ His 52)</scene> ·· <scene name='Studio:G1SecL01/1/33'>Loop 2</scene> ·· <scene name='Studio:G1SecL01/1/34'>Lysine 253</scene> <scene name='Studio:G1SecL01/1/35'>(CPK coloring)</scene> ·· <scene name='Studio:G1SecL01/1/36'>Loop 3</scene> <br>
<scene name='Studio:G1SecL01/1/12'>H6831</scene>''': '''
<scene name='Studio:G1SecL01/1/12'>H6831</scene>''': '''
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Fab is unable to clear bacteria in the absence of these cations.<ref name=ding /> It is speculated that OspB-Cb2 (a Fab similar to H6831) complexes could lead to the lysis of the cell by creating physical openings in the OM, allowing for rapid infusion of electrolytes and increasing the [http://en.wikipedia.org/wiki/Osmolarity osmolarity] of the [http://en.wikipedia.org/wiki/Periplasm periplasm].<ref name="escudero">PMID:9125579</ref>
Fab is unable to clear bacteria in the absence of these cations.<ref name=ding /> It is speculated that OspB-Cb2 (a Fab similar to H6831) complexes could lead to the lysis of the cell by creating physical openings in the OM, allowing for rapid infusion of electrolytes and increasing the [http://en.wikipedia.org/wiki/Osmolarity osmolarity] of the [http://en.wikipedia.org/wiki/Periplasm periplasm].<ref name="escudero">PMID:9125579</ref>
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<!--
<Structure load='1P4P' size='250' frame='true' align='right' caption='<b>Figure 7: Portion of OspB obtained by proteolysis</b>' scene='User:Stephanie_Maung/Sandbox/Gray_1p4p/1'/>
<Structure load='1P4P' size='250' frame='true' align='right' caption='<b>Figure 7: Portion of OspB obtained by proteolysis</b>' scene='User:Stephanie_Maung/Sandbox/Gray_1p4p/1'/>
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<p>
<p>
Due to its effective bactericidal actions, H6831 is used to generate less virulent escape variants of ''B. burgdorferi''. <ref name="becker"/> In the majority of the mutations created from in vivo and in vitro immunization of mice, truncated forms of OspB within the C terminus lead to premature stop codons.<ref>PMID:8308101 </ref> It has been suggested that OspB mutants are more sensitive to proteolysis due to missense mutations that disturb the conformation of OspB <ref name="becker"/>. Truncated OspBs cease within the two C-terminal beta-strands of the central sheet. H6831 disorders or removes a beta sheet from OspB after binding. Cleavage may be a possible explanation for the conformational changes of OspB. <ref name="escudero">PMID:9125579</ref> In <scene name='User:Stephanie_Maung/Sandbox/Gray_1p4p/1'>H-6831 free</scene> and <scene name='User:Stephanie_Maung/Sandbox/1rjl_chainc/1'>H-6831 bound</scene> forms of OspB, some changes result from proteolysis near the N terminus <ref name="becker"/>. Residues 157 - 201 on OspB contain the <scene name='User:Stephanie_Maung/Sandbox/1p4p_proteolysed_region_triad/2'>cleaved region</scene>, shown in pink.
Due to its effective bactericidal actions, H6831 is used to generate less virulent escape variants of ''B. burgdorferi''. <ref name="becker"/> In the majority of the mutations created from in vivo and in vitro immunization of mice, truncated forms of OspB within the C terminus lead to premature stop codons.<ref>PMID:8308101 </ref> It has been suggested that OspB mutants are more sensitive to proteolysis due to missense mutations that disturb the conformation of OspB <ref name="becker"/>. Truncated OspBs cease within the two C-terminal beta-strands of the central sheet. H6831 disorders or removes a beta sheet from OspB after binding. Cleavage may be a possible explanation for the conformational changes of OspB. <ref name="escudero">PMID:9125579</ref> In <scene name='User:Stephanie_Maung/Sandbox/Gray_1p4p/1'>H-6831 free</scene> and <scene name='User:Stephanie_Maung/Sandbox/1rjl_chainc/1'>H-6831 bound</scene> forms of OspB, some changes result from proteolysis near the N terminus <ref name="becker"/>. Residues 157 - 201 on OspB contain the <scene name='User:Stephanie_Maung/Sandbox/1p4p_proteolysed_region_triad/2'>cleaved region</scene>, shown in pink.
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</p>
<h4>Potential Catalytic Triad</h4>
<h4>Potential Catalytic Triad</h4>
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<!--
<p>
<p>
<Structure load='1p4p' size='250' frame='true' align='left' caption='<b>Figure 8: Three-Dimensional Structure of Outer Surface Protein B (OspB)</b>' scene='Insert optional scene name here' />
<Structure load='1p4p' size='250' frame='true' align='left' caption='<b>Figure 8: Three-Dimensional Structure of Outer Surface Protein B (OspB)</b>' scene='Insert optional scene name here' />
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[[Image: Cataly.png|300px|right|thumb|<b>Figure 9: Comparison of the Compositions of the OspB and a Serine Protease Catalytic Triads</b>]]
[[Image: Cataly.png|300px|right|thumb|<b>Figure 9: Comparison of the Compositions of the OspB and a Serine Protease Catalytic Triads</b>]]
The mechanism by which H6831 Fab destroys a spirochete appears to be a novel interaction. It is possible that Fab binding changes the properties of OspB folding, which may increase sensitivity of the protein to proteolysis or aggregation. NMR methods showed that the effects of binding can be sent to regions of the antigen distant from epitope, which is at the <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_rainbow/1'>C-terminus</scene> shown in red (N-terminus in blue). OspB shows signs of truncation after interacting with Fab of H6831 <ref>PMID: 1382591</ref>.
The mechanism by which H6831 Fab destroys a spirochete appears to be a novel interaction. It is possible that Fab binding changes the properties of OspB folding, which may increase sensitivity of the protein to proteolysis or aggregation. NMR methods showed that the effects of binding can be sent to regions of the antigen distant from epitope, which is at the <scene name='User:Olivia_Cheng/Sandbox_1/1p4p_rainbow/1'>C-terminus</scene> shown in red (N-terminus in blue). OspB shows signs of truncation after interacting with Fab of H6831 <ref>PMID: 1382591</ref>.
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<h3>Structure of OspA</h3>
<h3>Structure of OspA</h3>
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<table width='400' align='left' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><Structure load='1FJ1' size='350' frame='true' align='center' name='OspA-manip' caption='<b>Figure 10: Three-Dimensional Structure of Outer Surface Protein A (OspA) ([[1fj1|1FJ1]], chain F).' scene='Studio:G2SecL03/Ospa_3loopscartoon/3'/>
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<table width='400' align='left' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td>
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<!-- <td bgcolor='#eeeeee'><Structure load='1FJ1' size='350' frame='true' align='center' name='OspA-manip' caption='<b>Figure 10: Three-Dimensional Structure of Outer Surface Protein A (OspA) ([[1fj1|1FJ1]], chain F).' scene='Studio:G2SecL03/Ospa_3loopscartoon/3'/>
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<h3>Antibodies to OspA</h3>
<h3>Antibodies to OspA</h3>
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<table width='450' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><Structure load='1FJ1' size='400' frame='true' align='center' scene='Studio:G1SecL01/2/1' />
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<table width='450' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td>
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</td></tr><tr><td bgcolor='#eeeeee'><center>'''OspA-LA2 Complex''' (<scene name='Studio:G1SecL01/2/1'>Initial Scene</scene>)<br>
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<!-- <td bgcolor='#eeeeee'><Structure load='1FJ1' size='400' frame='true' align='center' scene='Studio:G1SecL01/2/1' />
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</td> --> </tr><tr><td bgcolor='#eeeeee'><center>'''OspA-LA2 Complex''' (<scene name='Studio:G1SecL01/2/1'>Initial Scene</scene>)<br>
<scene name='Studio:G1SecL01/2/1'>OspA-LA2 Complex</scene>''':''' <scene name='Studio:G1SecL01/2/2'>Three Loops</scene> '''··''' <scene name='Studio:G1SecL01/2/3'>Ser 206</scene>
<scene name='Studio:G1SecL01/2/1'>OspA-LA2 Complex</scene>''':''' <scene name='Studio:G1SecL01/2/2'>Three Loops</scene> '''··''' <scene name='Studio:G1SecL01/2/3'>Ser 206</scene>
</center></td></tr></table>
</center></td></tr></table>
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== VlsE and Lyme Disease ==
== VlsE and Lyme Disease ==
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<table width='400' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td><td bgcolor='#eeeeee'><applet load='1l8w.pdb' size='400' frame='true' align='right' scene='Studio:G5SecL01/Main_image_vlse/1' /></td></tr><tr><td bgcolor='#eeeeee'><center>'''Variable Major Protein (VMP)-like sequence Expressed''' ([[1l8w]]), resolution 2.3&Aring;
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<table width='400' align='right' cellpadding='5'><tr><td rowspan='2'>&nbsp;</td>
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<!-- <td bgcolor='#eeeeee'><applet load='1l8w.pdb' size='400' frame='true' align='right' scene='Studio:G5SecL01/Main_image_vlse/1' /></td> --></tr><tr><td bgcolor='#eeeeee'><center>'''Variable Major Protein (VMP)-like sequence Expressed''' ([[1l8w]]), resolution 2.3&Aring;
[[Image:VLSE PRIMARY STRUCTURE4343.png|400px]]<br>
[[Image:VLSE PRIMARY STRUCTURE4343.png|400px]]<br>
<nowiki>*</nowiki><small>'''This representation of VlsE illustrates the only crystal structure available on the [http://www.rcsb.org/pdb/explore/explore.do?structureId=1l8w PDB site]. There are 10<sup>30</sup> possible combinations of the VR.'''</small>
<nowiki>*</nowiki><small>'''This representation of VlsE illustrates the only crystal structure available on the [http://www.rcsb.org/pdb/explore/explore.do?structureId=1l8w PDB site]. There are 10<sup>30</sup> possible combinations of the VR.'''</small>
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==References==
==References==
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<references />
<references />
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Course director, course co-developer, writer, editor: Marvin H. O'Neal III<br>
Course director, course co-developer, writer, editor: Marvin H. O'Neal III<br>
Supported by: Howard Hughes Medical Institute 52006940
Supported by: Howard Hughes Medical Institute 52006940
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</StructureSection>
==Proteopedia Page Authors==
==Proteopedia Page Authors==
[http://proteopedia.org/wiki/index.php/User:Safa_Abdelhakim Safa Abdelhakim],
[http://proteopedia.org/wiki/index.php/User:Safa_Abdelhakim Safa Abdelhakim],

Revision as of 19:30, 26 March 2014

PDB ID 1ggq

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Proteopedia Page Authors

Safa Abdelhakim, Frank J. Albergo, Irene Chen, Olivia Cheng, Rachel Cirineo, Jenny Kim Kim, Alexandros Konstantinidis, Cara Lin, Stephanie Maung, Christopher Morales, Andrea Mullen, Niamh B. O'Hara, Marvin H. O'Neal III, Philip J. Pipitone, Kimberly Slade, Christopher Smilios, Raymond Suhandynata, Khine Tun, Tanya Turkewitz, Ying Zhao, La Zhong, Jonathan Manit Wyrick.

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