Highlighted Proteins of Lyme Disease

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<StructureSection load='1ggq' size='350' side='right' caption='' scene=''>
<StructureSection load='1ggq' size='350' side='right' caption='' scene=''>
[[Image:BorreliaGeneExpressionCycle.png|500px|right|thumb|<b>Figure 1: Abundance of Highlighted Proteins Over <i>Borrelia</i> Life Cycle.</b>]]
[[Image:BorreliaGeneExpressionCycle.png|500px|right|thumb|<b>Figure 1: Abundance of Highlighted Proteins Over <i>Borrelia</i> Life Cycle.</b>]]
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[http://en.wikipedia.org/wiki/Lyme_disease Lyme disease] is caused by three species of bacteria belonging to the genus <i>Borrelia</i>.<ref>PMID: 7043737</ref><ref>PMID: 6828119 </ref> <i>Borrelia burgdorferi</i>, an obligate parasite, is the most common cause of the disease in the United States and is transmitted via hard-bodied ticks of the [http://en.wikipedia.org/wiki/Ixodidae <i>Ixodidae</i>] family, commonly known as the blacklegged or deer ticks. <i>Borrelia</i> spirochetes are motile, helical bacteria whose cell membranes have many exposed, surface lipoproteins that are involved in both the pathogenesis and life cycle of the parasite. Two predominant groups of the surface lipoproteins present are classified as outer surface proteins (Osps), which have been characterized as Osps A through F, and the variable major protein-like sequence expressed (VlsE). Both of these groups of outer surface proteins play important roles in both the pathogenesis and life cycle of <i>Borrelia</i> as well as roles in eliciting an immune response of the host organism (Figure 1).<ref name="connolly">PMID: 15864264</ref>
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[http://en.wikipedia.org/wiki/Lyme_disease Lyme disease] is caused by three species of bacteria belonging to the genus <i>Borrelia</i>.<ref>PMID: 7043737</ref><ref>PMID: 6828119 </ref> <i>Borrelia burgdorferi</i>, an obligate parasite, is the most common cause of the disease in the United States and is transmitted via hard-bodied ticks of the [http://en.wikipedia.org/wiki/Ixodidae <i>Ixodidae</i>] family, commonly known as the blacklegged or deer ticks. <i>Borrelia</i> spirochetes are motile, helical bacteria whose cell membranes have many exposed, surface lipoproteins that are involved in both the pathogenesis and life cycle of the parasite. Two predominant groups of the surface lipoproteins present are classified as outer surface proteins (Osps), which have been characterized as Osps A through F, and the variable major protein-like sequence expressed (VlsE). Both of these groups of outer surface proteins play important roles in both the pathogenesis and life cycle of <i>Borrelia</i> as well as roles in eliciting an immune response within the host organism (Figure 1).<ref name="connolly">PMID: 15864264</ref>
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In a introductory biology course at Stony Brook University, undergraduates are modeling and exploring <i>B. burgdorferi</i> outer surface proteins and their respective antibodies in which the host organism produces. This Proteopedia page is the product of their efforts, with a focus on highlighted proteins from the following categories: [[#OspC and Lyme Disease|OspC]], [[#OspB and Lyme Disease|OspB and the antibodies to OspB]], [[#OspA and Lyme Disease|OspA and the antibodies to OspA]], and [[#VlsE and Lyme Disease|VlsE]].
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In an introductory biology course at Stony Brook University, undergraduates are modeling and exploring <i>B. burgdorferi</i> outer surface proteins and their respective antibodies, in which the host organism produces. This Proteopedia page is the product of their efforts, with a focus on highlighted proteins from the following categories: [[#OspC and Lyme Disease|OspC]], [[#OspB and Lyme Disease|OspB and the antibodies to OspB]], [[#OspA and Lyme Disease|OspA and the antibodies to OspA]], and [[#VlsE and Lyme Disease|VlsE]].
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The goal of this Proteopedia page is to describe Lyme disease from a structural biology perspective in order to answer key questions regarding the relationship between the structure and function of <i> B. burgdorferi</i> proteins. What do <i>B. burgdorferi</i> outer surface proteins look like? How does the structure/function of these proteins relate to the infection cycle of <i>B. burgdorferi</i>? What are the structural targets of the human immune system and how have these targets evolved? What are the ideal structural targets for a vaccine to protect against Lyme disease?
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The goal of this Proteopedia page is to describe Lyme disease from a structural biology perspective in order to answer key questions regarding the relationship between the structure and function of <i> B. burgdorferi</i> proteins. Some of the key questions answered on this page include, but are not limited to: What do <i>B. burgdorferi</i> outer surface proteins look like? How does the structure/function of these proteins relate to the infection cycle of <i>B. burgdorferi</i>? What are the structural targets of the human immune system and how have these targets evolved? What are the ideal structural targets for a vaccine to protect against Lyme disease?
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<h3>Structure of the OspB-H6831 Complex</h3>
<h3>Structure of the OspB-H6831 Complex</h3>
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The <scene name='Studio:G1SecL01/1/30'>OspB-H6831 complex</scene> consists of two components: outer surface protein B (<scene name='Studio:G1SecL01/1/11'>OspB</scene>) and the <scene name='Studio:G1SecL01/1/12'>Fab</scene>, which is subdivided into the <scene name='Studio:G1SecL01/1/14'>heavy chain</scene> and the <scene name='Studio:G1SecL01/1/13'>light chain</scene>. Most hydrogen bonds and electrostatic interactions that are responsible for the binding of H6831 to OspB are between the <scene name='Studio:G1SecL01/1/15'>three adjacent surface-exposed loops</scene> at the C-terminal of OspB and some <scene name='Studio:G1SecL01/1/37'>residues on the Fab heavy chain</scene> that include tyrosine, tryptophan, glutamate, and histidine.<ref name=becker>PMID:15713683</ref>
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The <scene name='Studio:G1SecL01/1/30'>OspB-H6831 complex</scene> consists of two components: the outer surface protein B (<scene name='Studio:G1SecL01/1/11'>OspB</scene>) and the region of an antibody known as the <scene name='Studio:G1SecL01/1/12'>Fab (Fragment Antigen-Binding)</scene> domain of H6831, which can then be further subdivided into the <scene name='Studio:G1SecL01/1/14'>heavy chain</scene> and the <scene name='Studio:G1SecL01/1/13'>light chain</scene> of an antibody. Most hydrogen bonds and electrostatic interactions that are responsible for the binding of H6831 to OspB are between the <scene name='Studio:G1SecL01/1/15'>three adjacent, surface-exposed loops</scene> at the C-terminal of OspB and <scene name='Studio:G1SecL01/1/37'>residues on the Fab heavy chain variable region</scene>, that include tyrosine, tryptophan, glutamate, and histidine.<ref name=becker>PMID:15713683</ref>
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The majority of hydrogen bonds and electrostatic interactions are between <scene name='Studio:G1SecL01/1/33'>Loop2</scene> (residues 250-254) and the Fab heavy chain. <scene name='Studio:G1SecL01/1/34'>Lys 253</scene> in loop 2 of OspB has a necessary and major role due to its central position in the exposed loops. A mutation at its position abrogates the binding interaction and causes the resistance of the bacteria to the bactericidal effect of the Fab. Lys 253 interacts with the two aromatic residues on the Fab heavy chain, tyrosine and tryptophan. It also makes hydrogen bonds with the glutamate 50 in the heavy chain of the Fab and forms an ionic bond. Carbonyl in <scene name='Studio:G1SecL01/1/31'>loop 1</scene> of the OspB interacts with <scene name='Studio:G1SecL01/1/32'>histidine 52</scene> in the Fab heavy chain. <scene name='Studio:G1SecL01/1/36'>Loop 3</scene> of OspB interacts with Fab light chain.<ref name=becker />
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The majority of hydrogen bonds and electrostatic interactions are between <scene name='Studio:G1SecL01/1/33'>Loop2</scene> (residues 250-254) and the Fab heavy chain variable region. <scene name='Studio:G1SecL01/1/34'>Lys253</scene> in loop 2 of OspB has a critical role due to its central position in the surface-exposed loops. A mutation at its position abrogates the binding interaction and causes the resistance of the bacteria to the bactericidal effect of either the CB2 or H6831 Fab.<ref name="coleman">PMID: 7505260</ref> Lys253 interacts with two aromatic residues on the Fab heavy chain - tyrosine and tryptophan and also forms and ionic bond and multiple hydrogen bonds with Glu50 in the heavy chain of the Fab. A carbonyl group in <scene name='Studio:G1SecL01/1/31'>loop 1</scene> of OspB interacts with <scene name='Studio:G1SecL01/1/32'>his52</scene> in the Fab heavy chain, and <scene name='Studio:G1SecL01/1/36'>loop 3</scene> of OspB interacts with the Fab light chain variable region.<ref name=becker />
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<h4>Structural changes to OspB in the complexed form</h4>
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<h4>Structural changes to OspB in the Complexed Form</h4>
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The binding of H6831 to OspB leads to some conformational changes in OspB compared to its <scene name='Studio:G1SecL01/3/2'> unbound form </scene>. [http://en.wikipedia.org/wiki/Crystallography Crystallography] has shown that the most significant difference is the loss of the <scene name='Studio:G1SecL01/3/3'>central β sheet strands 1-4 </scene>.<ref name=becker /> The loss of these β sheets may be due to conformational change as a result of the binding or a disorder that could have occurred during a crystallization of the complex. Both small positional shifts near the Fab binding site and a few larger structural changes away from the binding site were observed. The largest shifts (7– 8 Å) correspond to the repositioning of a loop opposite the Fab-binding site <scene name='Studio:G1SecL01/1/38'>at residues 218-220</scene>. In the free OspB structure, all regions that exhibit shifts are adjacent to the central sheet; in the OspB-H6831 complex they all shift toward, and slightly overlap the position of the missing sheet.
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The binding of CB2 or H6831 to OspB leads to some conformational changes within OspB - compared to its <scene name='Studio:G1SecL01/3/2'>unbound form</scene>. This was reflected in limited proteolysis experiments performed with recombinant OspB and CB2 in which unbound, recombinant OspB was readily cleaved by trypsin and Arg-C. Following CB2 binding, the rate of cleavage was significantly lowered, suggesting a conformational change in OspB upon binding to CB2.
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[http://en.wikipedia.org/wiki/Crystallography Crystallography] has shown that the most significant difference is the loss of the central β-sheet strands<scene name='Studio:G1SecL01/3/3'> 1-4 </scene>.<ref name=becker /> The loss of these β-sheets may be due to a conformational change as a result of the binding or a disorder that could have occurred during the crystallization of the complex. Both small positional shifts near the Fab binding site and a few larger structural changes away from the binding site were observed. The largest shifts (7– 8 Å) correspond to the repositioning of a loop opposite the Fab-binding site at residues<scene name='Studio:G1SecL01/1/38'> 218-220</scene>. In the free OspB structure, all regions that exhibit shifts are adjacent to the central sheet; in the OspB-H6831 complex they all shift toward, and slightly overlap, the position of the missing sheet.<ref name="becker">PMID: 15713683</ref>
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Aromatic residues tryptophan and tyrosine are also present in the OspB-H6831 interaction - a feature found in many antigen-antibody complexes. Lys253 forms a trans conformation between these aromatic residues of H6831. In the complex structure of the antibody binding site, the electron density is well defined and shows increased contact between Lys253 and the antigen-binding sire of the Fab. Most of the electrostatic and hydrogen-bond interactions occur between loop 2 and the Fab heavy chain.
<h3>Potential Mechanism of Lysis</h3>
<h3>Potential Mechanism of Lysis</h3>
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The Fab binding destabilizes the [http://en.wikipedia.org/wiki/Bacterial_outer_membrane outer membrane] (OM) of B. burdorferi, with subsequent formation of [http://en.wikipedia.org/wiki/Spheroplast spheroplasts]. It has been observed that the bactericidal action, but not the binding, requires the presence of divalent cations (Mg<sup>2+</sup> and Ca<sup>2+</sup>), and
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CB2 Fab binding destabilizes the [http://en.wikipedia.org/wiki/Bacterial_outer_membrane outer membrane] (OM) of <i>B. burgdorferi</i>, with subsequent formation of [http://en.wikipedia.org/wiki/Spheroplast spheroplasts]. Throught the use of single chaine variable fragment (scFv) of a related complement-independent bactericidal antibody, the bactericidal activity of these antibodies has been shown to reside in the antibody variable region alone (NEEDS ADDED REFERENCE 7 FROM REVISION PAPER). It has been observed that the bactericidal action, but not the binding, requires the presence of divalent cations (Mg<sup>2+</sup> and Ca<sup>2+</sup>), and the CB2-bound Fab is unable to clear bacteria in the absence of these cations.<ref name=ding /> Once CB2 binds to OspB, it leads to the lysis of the bacterial cell (<i>B. burgdorferi</i>) through membrane/vesicle removal. (NEEDS REFERENCE 8 FROM LAROCCA REVISION PAPER) Eventually, enough membrane is lost, leading to the creation of physical openings in the OM of a defined size around the entire cell - increasing permeability and allowing for a rapid infusion of electrolytes which then leads to osmotic lysis of the organisms. (NEEDS REFERENCE 8 FROM LAROCCA REVISION)
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Fab is unable to clear bacteria in the absence of these cations.<ref name=ding /> It is speculated that OspB-Cb2 (a Fab similar to H6831) complexes could lead to the lysis of the cell by creating physical openings in the OM, allowing for rapid infusion of electrolytes and increasing the [http://en.wikipedia.org/wiki/Osmolarity osmolarity] of the [http://en.wikipedia.org/wiki/Periplasm periplasm].<ref name="escudero">PMID:9125579</ref>
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Interestingly, cholesterol and prokaryotic lipid rafts are critical for the bactericidal mechanism of CB2. (NEEDS REFERENCE 9 FROM LAROCCA REVISION PAPER) It is unusual for prokaryotic organisms to have membrane cholesterol and <i>Borrelia</i> is one of the few that does have this sterol. (10,11) Indeed as is the case in eukaryotic cells, the presence of cholesterol in the <i>Borrelia</i> membrane leads to the formation of distinct membrane microdomains called [http://en.wikipedia.org/wiki/Lipid_raft lipid rafts]. (9/12) The prokaryotic lipid rafts of <i>Borrelia</i> share the biochemical and biophysical characteristics of eukaryotic lipid rafts. (12) In eukaryotes, lipid rafts are specialized membrane platforms that serve a critical role in cell signaling
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<Structure load='1P4P' size='250' frame='true' align='right' caption='<b>Figure 7: Portion of OspB obtained by proteolysis</b>' scene='User:Stephanie_Maung/Sandbox/Gray_1p4p/1'/>
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<p> (12) The dependence on the presence of cholesterol for the bactericidal mechanism of CB2 suggests that the prokaryotic lipid rafts of <i>Borrelia</i> are necessary for the bactericidal effect of complement-independent antibodies. It is speculated that lipid rafts may contribute to this bactericidal mechanism by enhancing OspB coalescence and membrane blebbing/removal. Additionally, enhance coalescence of OspB due to the presence of lipid raft interactions may trigger a cell-signaling pathway that is required for the bactericidal effect of complement-independent antibodies. (9) This idea, howeverm is speculative. Interestingly, the binding of CB2 to OspB results in changes in gene expression in <i>B. burgdorferi</i> (14) which could be suggestive of cell signaling. In particular, there were dramatic changes in the expression of phage holins genes, which could conceivably result in the assembly of bacteriophages that could attack the <i>Borrelia</i> membrane internally.
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Due to its effective bactericidal actions, H6831 is used to generate escape variants of ''B. burgdorferi''. <ref name="becker"/> In the majority of the mutations created from <i>in vivo</i> and <i>in vitro</i> immunization of mice, truncated forms of OspB within the C-terminus lead to premature stop codons.<ref>PMID:8308101 </ref> It has been suggested that OspB mutants are more sensitive to proteolysis due to missense mutations that disturb the conformation of OspB <ref name="becker"/>.
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Due to its effective bactericidal actions, H6831 is used to generate less virulent escape variants of ''B. burgdorferi''. <ref name="becker"/> In the majority of the mutations created from in vivo and in vitro immunization of mice, truncated forms of OspB within the C terminus lead to premature stop codons.<ref>PMID:8308101 </ref> It has been suggested that OspB mutants are more sensitive to proteolysis due to missense mutations that disturb the conformation of OspB <ref name="becker"/>. Truncated OspBs cease within the two C-terminal beta-strands of the central sheet. H6831 disorders or removes a beta sheet from OspB after binding. Cleavage may be a possible explanation for the conformational changes of OspB. <ref name="escudero">PMID:9125579</ref> In <scene name='User:Stephanie_Maung/Sandbox/Gray_1p4p/1'>H-6831 free</scene> and <scene name='User:Stephanie_Maung/Sandbox/1rjl_chainc/1'>H-6831 bound</scene> forms of OspB, some changes result from proteolysis near the N terminus <ref name="becker"/>. Residues 157 - 201 on OspB contain the <scene name='User:Stephanie_Maung/Sandbox/1p4p_proteolysed_region_triad/2'>cleaved region</scene>, shown in pink.
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Aromatic residues tyrosine and tryptophan are also present in the OspB-H6831 interaction, a feature found in many antigen-antibody complexes. The Lys-253 residue forms a trans conformation between these aromatic residues of H6831. In the complex structure of the antibody binding site, the electron density is well defined and shows increased contact between Lys-253 and the antigen-binding site of the Fab. Most of the electrostatic and hydrogen-bond interactions occur between loop 2 and the Fab heavy chain.
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<h4>Potential Catalytic Triad</h4>
<h4>Potential Catalytic Triad</h4>

Revision as of 03:40, 1 April 2014

PDB ID 1ggq

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Proteopedia Page Authors

Safa Abdelhakim, Frank J. Albergo, Irene Chen, Olivia Cheng, Rachel Cirineo, Jenny Kim Kim, Alexandros Konstantinidis, Cara Lin, Stephanie Maung, Christopher Morales, Andrea Mullen, Niamh B. O'Hara, Marvin H. O'Neal III, Philip J. Pipitone, Kimberly Slade, Christopher Smilios, Raymond Suhandynata, Khine Tun, Tanya Turkewitz, Ying Zhao, La Zhong, Jonathan Manit Wyrick.

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