Ribosomal protein L5

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[[1iq4]] – RPL5 – ''Geobacillus stearothermophilus''
[[1iq4]] – RPL5 – ''Geobacillus stearothermophilus''
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=== L5 in 50S subunit+RNA ===
 
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[[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – TtRPL5 in 50S subunit+RNA fragments - ''Thermus thermophilus''<br />
 
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[[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[2wrj]], [[2wrl]], [[2wro]], [[2wrr]], [[3hux]], [[3huz]], [[2wh2]], [[2wh4]], [[2wdi]], [[2wdj]], [[2wdl]], [[2wdn]], [[1vsp]], [[2v47]], [[2v49]], [[1vsa]], [[2hgj]], [[2hgq]], [[2hgu]], [[2j01]], [[2j03]], [[1yl3]], [[3mrz]], [[3ms1]], [[3i8f]], [[3i8i]], [[3i9c]], [[3i9e]], [[3f1f]], [[3f1h]], [[3d5b]], [[3d5d]], [[2b66]], [[2b9n]], [[2b9p]], [[1giy]], [[2y0v]], [[2y0x]], [[2y0z]], [[2y11]], [[2y13]], [[2y15]], [[2y17]], [[2y19]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]], [[3tve]], [[3tvh]], [[3uye]], [[3uyg]], [[3uz1]], [[3uz2]], [[3uz8]], [[3uz9]], [[3uzf]], [[3uzh]], [[3uzk]], [[3uzn]], [[4dha]], [[4dhc]], [[3v23]], [[3v25]], [[3v27]], [[3v29]], [[3v2d]], [[3v2f]], [[3zvp]], [[3v6w]], [[3v6x]], [[3zn9]], [[3zne]], [[4b8g]], [[4b8i]], [[4btd]], [[4ejb]], [[4ejc]], [[4g5l]], [[4g5n]], [[4g5u]], [[4g5w]], [[4jux]], [[4k0m]], [[4k0q]], [[4kbu]], [[4kbw]], [[4kcz]], [[4kd2]], [[4kd9]], [[4kdb]], [[4kdh]], [[4kdk]], [[4kfi]], [[4kfl]] - TtRPL5 in 50S subunit+5S RRNA+23S RRNA<br />
 
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[[3fin]] - TtRPL5 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br />
 
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[[2wwq]] – EcRPL5 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – ''Escherichia coli''<br />
 
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[[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3ofd]], [[3og0]], [[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]], [[3r8s]], [[3r8t]], [[3uos]], [[3uxq]], [[3uxr]], [[3sgf]], [[3j37]], [[4kix]], [[4kiz]], [[4kj1]], [[4kj3]], [[4kj5]], [[4kj7]], [[4kj9]], [[4kjb]] - EcRPL5 in 50S subunit+5S RRNA+23S RRNA<br />
 
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[[3fik]], [[2gya]], [[2gyc]], [[3bbx]], [[1p85]], [[1p86]], [[3izt]], [[3izu]], [[3j0t]], [[3j0w]], [[3j0y]], [[3j11]], [[3j12]], [[3j14]], [[3j19]] - EcRPL5 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br />
 
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[[3kcr]] - EcRPL5 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br />
 
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[[3j01]] – EcRPL5 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase – Cryo-EM<br />
 
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[[2rdo]] - EcRPL5 in 50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM<br />
 
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[[3bbo]] - RPL5 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach<br />
 
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[[3iy9]] – RPL5 in 50S subunit – ''Leishmania taretolae''<br />
 
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[[2zjq]], [[2zjr]], [[1nkw]] - DrRPL5 in 50S subunit+5S RRNA+23S RRNA – ''Deinococcus radiodurans''<br />
 
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[[1kqs]], [[1qvg]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA+CCA - ''Haloarcula marismortui''<br />
 
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[[1jj2]], [[1ffk]], [[3cc2]], [[2qa4]], [[1s72]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA<br />
 
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[[3cc7]], [[3cce]], [[3ccj]], [[3ccl]], [[3ccm]], [[3ccq]], [[3ccr]], [[3ccs]], [[3ccu]], [[3ccv]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA (mutant)<br />
 
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[[1vq4]], [[1vq5]], [[1vq7]], [[1vql]], [[1vqm]], [[1vqp]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA+transition state analog<br />
 
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[[1vq6]], [[1vqk]], [[1vqn]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA+ c-hpmn+CCA-Phe-caproic acid-biotin<br />
 
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[[1vqo]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA+ CCPMN<br />
 
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[[1yhq]], [[1yi2]], [[1yij]], [[1yjn]], [[1yjw]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA (mutant)+antibiotic<br />
 
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[[1yj9]] - HmRPL5P in 50S subunit (L22 mutant)+5S RRNA+23S RRNA<br />
 
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[[1qvf]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA + deacylated tRNA minihelix<br />
 
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[[1q86]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA+CCA-Phe-caproic acid-biotin<br />
 
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[[3j21]] – RPL5 in 50S subunit – ''Pyrococcus furiosus''<br />
 
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[[3j3v]] – RPL5 in 50S subunit – Bacillus subtilis<br />
 
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=== L5 in 50S subunit + antibiotics ===
 
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[[3dll]], [[2zjp]], [[3cf5]], [[1xbp]], [[1sm1]], [[1nwx]], [[1nwy]], [[3pio]], [[3pip]] - DrRPL5 in 50S subunit+5S RRNA+23S RRNA+antibiotic <br />
 
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[[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]] – TtRPL5 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br />
 
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[[2qam]], [[2qao]], [[2qoz]], [[2qp1]], [[2qba]], [[2qbc]], [[3ofc]], [[3ofz]], [[3ofq]], [[3ofr]], [[1vt2]], [[3orb]], [[3oas]], [[3oat]], [[4gar]], [[4gau]], [[4l6j]], [[4l6l]] - EcRPL5 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br />
 
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[[1k73]], [[1kc8]], [[1k8a]], [[1k9m]], [[1kd1]], [[1m1k]], [[3i55]], [[3i56]], [[3g4s]], [[3g6e]], [[3g71]], [[2qex]], [[3cpw]], [[3cc4]], [[3cd6]], [[2otj]], [[2otl]], [[1yit]], [[1q7y]], [[1q81]], [[1q82]], [[1n8r]], [[1nji]], [[3cxc]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA+antibiotics - ''Halobacterium marismortui''<br />
 
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[[1m90]], [[3cma]], [[3cme]], [[1vq8]], [[1vq9]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA+ sparsomycin+CCA-Phe-caproic acid-biotin<br />
 
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=== L5 in 60S subunit ===
 
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[[3jyw]] - RPL5 in 60S subunit – ''Thermomyces lanuginosus'' – Cryo-EM<br />
 
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[[3izr]] - RPL5 in 60S subunit – wheat – Cryo-EM<br />
 
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[[3j39]] – RPL5 in 60S subunit – ''Drosophila melanogaster'' – Cryo-EM<br />
 
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[[3j3b]] – RPL5 in 60S subunit – human – Cryo-EM<br />
 
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[[1s1i]] - yRPL5 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast<br />
 
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[[3izs]] – yRPL4 in 60S ribosomal subunit – Cryo-EM<br />
 
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[[3o58]], [[3o5h]] – yRPL5 in 60S subunit+25S RRNA+5SRRNA+5.8RRNA
 
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=== L5 in large + small ribosomal subunit ===
 
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[[1ml5]] - EcRPL5 in 50S ribosomal subunit+30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA – EM<br />
 
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[[2zkr]] - RPL5 in 60S ribosomal subunit+30S ribosomal subunit+28S RRNA+5.8S RRNA – Cryo-EM - dog<br />
 
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=== L5 in 50S subunit + ribosome releasing factor (RRF) ===
 
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[[2qbe]], [[2qbg]], [[2qbi]], [[2qbk]], [[2z4l]], [[2z4n]] - EcRPL5 in 50S subunit+5S RRNA+23S RRNA+RRF<br />
 
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=== L5 in 50S subunit + various proteins ===
 
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[[2vhm]] - EcRPL5 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br />
 
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[[2j28]] - EcRPL5 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br />
 
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[[1w2b]] - HmRPL5P in 50S subunit+5S RRNA+23S RRNA+trigger factor N-terminal <br />
 
=== L5 in part of 50S subunit ===
=== L5 in part of 50S subunit ===
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[[3iyx]], [[3iyy]] – EcRPL5+RPS13+RPL31 – Cryo-EM<br />
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[[3iyx]], [[3iyy]] – EcRPL5+RPS13+RPL31 – – ''Escherichia coli'' - Cryo-EM<br />
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[[1mji]] – TtRPL5+5S RRNA
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[[1mji]] – TtRPL5+5S RRNA - ''Thermus thermophilus''<br />
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[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 06:46, 24 April 2014

Image:RPL5.png
Crystal Structure of Ribosomal protein L5 from Thermus thermophilus (2xg0, chain G)

Template:STRUCTURE 2xg0








Ribosomal protein L5 (RPL5) is one of the 34 proteins which belong to the of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. It is known to bind to the 5S RRNA from the large subunit. In the archaea like in Haloarcula marismortui, the L5 is called L5P (RPL5P). The images at the left and at the right correspond to one representative RPL5, i.e. the crystal structure of Ribosomal protein L5 from Thermus thermophilus (2xg0, chain G).

Contents

3D Structures of Ribosomal protein L5

Updated on 24-April-2014

RPL5

1iq4 – RPL5 – Geobacillus stearothermophilus

L5 in part of 50S subunit

3iyx, 3iyy – EcRPL5+RPS13+RPL31 – – Escherichia coli - Cryo-EM
1mji – TtRPL5+5S RRNA - Thermus thermophilus

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman

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