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Ribosomal protein S2
From Proteopedia
(Difference between revisions)
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[[1vi5]], [[1vi6]] – RPS2P – ''Archaeoglobus fulgidus''<br /> | [[1vi5]], [[1vi6]] – RPS2P – ''Archaeoglobus fulgidus''<br /> | ||
| - | === S2 in small ribosomal subunit === | ||
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| - | [[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - TtRPS2 in 30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br /> | ||
| - | [[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+RNA fragment<br /> | ||
| - | [[3kc4]] - EcRPS2 in 30S ribosomal subunit - ''Escherichia coli''<br /> | ||
| - | [[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]] - EcRPS2 in 30S ribosomal subunit+16S RRNA<br /> | ||
| - | [[1i94]], [[1fka]], [[3uxs]], [[3uxt]], [[4dr1]] - TtRPS2 in 30S ribosomal subunit+16S RRNA<br /> | ||
| - | [[4duy]], [[4duz]], [[4dv0]], [[4dv1]], [[4dv2]], [[4dv3]], [[4dv4]], [[4dv5]], [[4dv6]], [[4dv7]] - TtRPS2 in 30S ribosomal subunit+16S RRNA (mutant)<br />[[4dr4]], [[4b3m]], [[4b3r]], [[4b3s]], [[4b3t]] - TtRPS2 in 30S ribosomal subunit+16S RRNA + mRNA<br /> | ||
| - | [[1p87]] - EcRPS2 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br /> | ||
| - | [[3bbn]] - RPS2 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach<br /> | ||
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| - | === S2 in small + large ribosomal subunit === | ||
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| - | [[1ml5]] - EcRPS2 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - Cryo-EM<br /> | ||
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| - | === S2 in small ribosomal subunit+ chain release factor === | ||
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| - | [[3mr8]], [[3ms0]] – TtRPS2 in 30S ribosomal subunit+THX+ RF-1+P-site tRNA+mRNA+16S RRNA<br /> | ||
| - | [[3d5a]], [[3d5c]] - TtRPS2 in 30S ribosomal subunit+THX+ RF-1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3zvo]] - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+ RF-3<br /> | ||
| - | [[2b64]] - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+ RF-1<br /> | ||
| - | [[2b9m]] - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+ RF-2<br /> | ||
| - | [[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS2 in 30S ribosomal subunit+THX+ RF-2+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3f1e]], [[3f1g]] - TtRPS2 in 30S ribosomal subunit+THX+ RF-2+P-site tRNA+E-site tRNA +16S RRNA<br /> | ||
| - | [[4kfh]], [[4kfk]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+ RF-2 + mRNA+ P-site tRNA fMet<br /> | ||
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| - | === S2 in small ribosomal subunit+tRNA+mRNA === | ||
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| - | [[2hgi]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br /> | ||
| - | [[4l6k]], [[4l6m]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA<br /> | ||
| - | [[2hgp]], [[2i2p]], [[2i2u]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br /> | ||
| - | [[3t1h]], [[3t1y]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br /> | ||
| - | [[3tvf]], [[3tvg]], [[3uyd]], [[3uyf]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA<br /> | ||
| - | [[3zn7]], [[3znd]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+A-site tRNA Ile agmatidine + E-site tRNA Ile agmatidine + mRNA<br /> | ||
| - | [[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br /> | ||
| - | [[2hgr]], [[3v6u]], [[3v6v]], [[4ej9]], [[4eja]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br /> | ||
| - | [[1yl4]] – TtRPS2 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br /> | ||
| - | [[1pns]] - EcRPS2 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br /> | ||
| - | [[3j13]] - EcRPS2 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br /> | ||
| - | [[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]], [[3j20]] - EcRPS2 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM | ||
| - | [[1xnq]], [[1xnr]]- TtRPS2 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA<br /> | ||
| - | [[4gkj]], [[4gkk]] - TtRPS2 in 30S ribosomal subunit +16S RRNA +THX + mRNA + tRNA Met<br /> | ||
| - | [[4jv5]], [[4jya]], [[4k0k]], [[4k0l]] - TtRPS2 in 30S ribosomal subunit +16S RRNA +THX + mRNA + ASL-tRNA <br /> | ||
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| - | === S2 in small ribosomal subunit+A-site tRNA === | ||
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| - | [[2uxd]], [[2uxc]] - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br /> | ||
| - | [[1n32]], [[1n33]] - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br /> | ||
| - | [[1n34]] - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br /> | ||
| - | [[1xmo]], [[1xmq]] - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br /> | ||
| - | [[2uxb]] - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA<br /> | ||
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| - | === S2 in small ribosomal subunit+P-site tRNA === | ||
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| - | [[3i8g]] - TtRPS2 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[3i8h]], [[3i9b]], [[3i9d]] - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[1ibk]] - TtRPS2 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br /> | ||
| - | [[2wwl]] - EcRPS2 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA <br /> | ||
| - | [[3i1q]] - EcRPS2 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA <br /> | ||
| - | [[3i1s]], [[3i1z]], [[3i21]] - EcRPS2 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA<br /> | ||
| - | [[2om7]] – TtRPS2+TtRPS12+TtRPL1+ P-site tRNA+16S RRNA fragment+23S RRNA fragment<br /> | ||
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| - | === S2 in small ribosomal subunit+A-site tRNA+P-site tRNA === | ||
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| - | [[1ibl]], [[1ibm]] - TtRPS2 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA<br /> | ||
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| - | === S2 in small ribosomal subunit+P-site tRNA+E-site tRNA === | ||
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| - | [[2ow8]] - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[2b9o]] - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br /> | ||
| - | [[2qnh]] - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
| - | [[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe<br /> | ||
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| - | === S2 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA === | ||
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| - | [[2gy9]], [[2gyb]] - EcRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br /> | ||
| - | [[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br /> | ||
| - | [[4k0p]] - TtRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA +mRNA +16S RRNA<br /> | ||
| - | [[3e1a]], [[3e1c]] - EcRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA<br /> | ||
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| - | === S2 in small ribosomal subunit + antibiotics === | ||
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| - | [[1i95]], [[1i97]], [[2hhh]], [[2f4v]], [[3oge]], [[3ogy]], [[3ohc]], [[3ohd]], [[3ohy]], [[3oi0]], [[3oi2]], [[3oi4]], [[4dr3]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+antibiotic<br /> | ||
| - | [[1hnw]], [[1hnx]], [[1hnz]], [[1fjg]], [[4aqy]], [[4dr5]], [[4dr6]], [[4dr7]], [[4khp]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic<br /> | ||
| - | [[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]], [[2qan]], [[2qal]], [[2quo]], [[2qow]], [[2qoy]], [[2qp0]], [[2z4k]], [[2z4m]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofyp]], [[3or9]], [[3ora]] - EcRPS2 in 30S ribosomal subunit+16S RRNA+antibiotic<br /> | ||
| - | [[4gaq]], [[4gas]] - EcRPS2 in 30S ribosomal subunit+16S RRNA+ mRNA + antibiotic<br /> | ||
| - | [[3sfs]] - EcRPS2 in 30S ribosomal subunit+16S RRNA+ mRNA + RF-3 + antibiotic<br /> | ||
| - | [[2j00]], [[2j02]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br /> | ||
| - | [[3knl]], [[3knm]], [[3knn]], [[3kno]], [[3knj]], [[3knh]] - TtRPS2 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+ antibiotics<br /> | ||
| - | [[3uz3]], [[3uz4]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin<br /> | ||
| - | [[4g5k]], [[4g5m]], [[4g5t]], [[4g5v]] - TtRPS2 in 30S ribosomal subunit+16S RRNA + tRNA fMet + mRNA + antibiotics<br /> | ||
| - | [[3uzl]], [[3uzm]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin | ||
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| - | === S2 in small ribosomal subunit + ribosome recycling factor === | ||
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| - | [[2qbd]], [[2qbf]] - EcRPS2 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br /> | ||
| - | [[3r8n]], [[3r8o]], [[4gd1]], [[4gd2]] - EcRPS2 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br /> | ||
| - | [[2qbh]], [[2qbj]] - EcRPS2 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br /> | ||
| - | [[2v46]], [[2v48]] - TtRPS2 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet<br /> | ||
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| - | === S2 in small ribosomal subunit + elongation factor === | ||
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| - | [[2wri]], [[2wrk]] - TtRPS2 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br /> | ||
| - | [[2wrn]], [[2wrq]] - TtRPS2 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br /> | ||
| - | [[3fic]] - TtRPS2 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br /> | ||
| - | [[4abr]] - TtRPS2 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br /> | ||
| - | [[2y0u]], [[2y0w]], [[2y0y]], [[2y10]], [[2y12]], [[2y14]], [[2y16]], [[2y18]] - TtRPS2 in30S subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br /> | ||
| - | [[3fih]] - EcRPS2 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br /> | ||
| - | [[3izv]] - EcRPS2 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br /> | ||
| - | [[3j18]] - EcRPS2 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br /> | ||
| - | [[3izw]] - EcRPS2 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br /> | ||
| - | [[3huw]], [[3huy]] - TtRPS2 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br /> | ||
| - | [[4b8f]], [[4b8h]] - TtRPS2 in 30S ribosomal subunit+THX+RNA+mRNA +16S RRNA+elongation factor G<br /> | ||
| - | [[4btc]], [[4kdg]], [[4kdj]] - TtRPS2 in 30S ribosomal subunit+THX+RNA +16S RRNA+elongation factor G<br /> | ||
| - | [[4juw]] - TtRPS2 in 30S ribosomal subunit+THX+ tRNA Phe +16S RRNA + mRNA +elongation factor G<br /> | ||
| - | [[4kbt]], [[4kbv]], [[4kcy]], [[4kd0]], [[4kd8]], [[4kda]] - TtRPS2 in 30S ribosomal subunit+THX+ tRNA Met +16S RRNA + mRNA + viomycin + elongation factor G<br /> | ||
| - | [[4kiy]], [[4kj0]], [[4kj2]], [[4kj4]], [[4kj6]], [[4kj8]], [[4kja]], [[4kjc]] - EcRPS2 in 30S ribosomal subunit +16S RRNA + viomycin + elongation factor G<br /> | ||
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| - | === S2 in small ribosomal subunit + translation initiation factor === | ||
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| - | [[1i96]] - TtRPS2 in 30S ribosomal subunit+THX+IF3+16S RRNA<br /> | ||
| - | [[1hr0]] - TtRPS2 in 30S ribosomal subunit+THX+IF+16S RRNA<br /> | ||
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| - | === S2 in small ribosomal subunit + various proteins === | ||
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| - | [[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS2 in 30S ribosomal subunit+toxin RelE+16S RRNA<br /> | ||
| - | [[1voq]], [[1vos]] , [[1vov]], [[1vox]], [[1voz]] - EcRPS2 in 30S ribosomal subunit+protein Y+16S RRNA<br /> | ||
| - | [[3j36]] - EcRPS2 in 30S ribosomal subunit+ tetracycline resistance protein +16S RRNA + mRNA + P-tRNA – Cryo-EM<br /> | ||
| - | [[1x18]] – TtRPS2+TtRPS7+TtRPS11+TtRPS18+GTP-binding protein ERA+RNA fragments<br /> | ||
| - | [[4dh9]], [[4dhb]] - TtRPS2 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br /> | ||
| - | [[3v22]], [[3v24]], [[3v26]], [[3v28]] - TtRPS2 in 30S ribosomal subunit +16S RRNA +THX + modulation factor<br /> | ||
| - | [[3v2c]], [[3v2e]] - TtRPS2 in 30S ribosomal subunit +16S RRNA +THX + ribosome-associated inhibitor<br /> | ||
| - | [[2ykr]] - EcRPS2 + 16S RRNA + GMPPNP + GTPase RSGA<br /> | ||
| - | [[4a2i]] - EcRPS2 + 16S RRNA + GTPase RSGA – Cryo EM<br /> | ||
| - | [[3uoq]] - EcRPS2 + 16S RRNA + mRNA + peptide chain release factor<br /> | ||
| - | [[4adv]] - EcRPS2 + 16S RRNA + methyltransferase – Cryo EM | ||
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| - | ===S2 in small 40S ribosomal subunit=== | ||
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| - | [[3jyv]] - TlRPS2 in 40S ribosomal subunit+RACK1+S19E+P-site tRNA – ''Thermomyces lanuginosus''<br /> | ||
| - | [[2xzm]], [[2xzn]] - RPS2 in 40S ribosomal subunit+RACK1 – ''Tetrahymena thermophila''<br /> | ||
| - | [[1s1h]] - yRPS2 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast<br /> | ||
| - | [[3izb]] - yRPS2 in 40S ribosomal subunit+ RACK1 – Cryo-EM<br /> | ||
| - | [[3o2z]], [[3o30]] - yRPS2 in 40S ribosomal subunit+ RACK1<br /> | ||
| - | [[3u5c]], [[3u5g]] - yRPS2 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br /> | ||
| - | [[3iz6]] - RPS2 in 40S ribosomal subunit+RACK1 - wheat<br /> | ||
| - | [[3j38]] - RPS2 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – ''Drosophila melanogaster'' – Cryo-EM<br /> | ||
| - | [[3j3a]] - RPS2 in 40S ribosomal subunit + EF-2 + guanine nucleotide-binding protein – human – Cryo-EM<br /> | ||
| - | [[4kzx]] - rRPS2 in 40S ribosomal subunit+ RACK1 + EIF1 – rabbit – Cryo-EM<br /> | ||
| - | [[4kzy]] - rRPS2 in 40S ribosomal subunit+ RACK1 + EIF1 + EIF1A – Cryo-EM<br /> | ||
| - | [[4kzz]] - rRPS2 in 40S ribosomal subunit+ RACK1 + EIF1A + initiator tRNA – Cryo-EM<br /> | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Revision as of 10:24, 24 April 2014
Image:S2.PNG
Crystal Structure of Ribosomal protein S2 (RPS2), 3kc4
Ribosomal protein S2 (RPS2) is one of the 22 proteins which belong to the of the bacterial ribosome. Its N-terminal is rich in Arg-Gly repeats and has two RGGF copies which are believed to be associated with nuclear localization and binding to RNA. In archaea the protein is called S2P (RPS2P). The images at the left and at the right correspond to one representative RPS2, i.e. the crystal structure of Ribosomal protein S2 from Escherichia coli (3kc4).
3D Structures of Ribosomal protein S2
Updated on 24-April-2014
S2
1vi5, 1vi6 – RPS2P – Archaeoglobus fulgidus
Proteopedia Page Contributors and Editors (what is this?)
Michal Harel, Alexander Berchansky, Wayne Decatur, Joel L. Sussman
