Believe It or Not!

From Proteopedia

Revision as of 09:18, 5 November 2014

A list of Useful, Useless or simply Interesting facts on Proteins, Structures and what's around them, automatically updated by OCA, the browser and database for structure and function.

The most common ...

• The mean PDB file is 195.51K ± 357.14K based on 104,970 files.
• The most common Ligand is GOL, present in 9,940 PDB structures (excluding SO4)
• The most common Space group is P 21 21, present in 26,639 PDB structures.
• There are 2 structure files with 12 citations (1het,3u87) and 4 structure files with 7 citations (1dwb,1dwc,1dwd,1dwe).
• The most common Chemical Element, after the common protein elements C,O,N,P,S is Zinc, found in 9,784 PDB structures.

The most conspicuous ...

• The PDB structure with the best resolution is 3nir, with 0.48 Å.
• The PDB structure with the worst resolution is 2tma, with 15.00 Å.
• The PDB structure with the shortest life is 2v4w with 11 days.
• The PDB structure with the most models is 2hyn, with 184 models.
• The PDB structures with the most related structures are 4b2b, 4b2c, 4b1t with 287 related structures each.
• The PDB structure with the most ligands is 3wu2 with 21 ligands.
• The PDB structure with the longest chain is 3j3f with 5,070 amino acids (alpha carbons only).
• The least common Chemical Elements are Dysprosium (4ll7), Indium (1ind), Neptunium (1yuh) and Vanadium (1qyl), found in 1 PDB structure each.
• The PDB structures with the shortest chain (greater than one residue) are 1ahg, 1b2m, 1cwp, 1d53, 1ddl, 1dn8, 1ehl, 1f0v, 1i8m, 1ijs, 1kqs, 1lgc, 1m6a, 1n38, 1oup, 1pv4, 1pvo, 1q81, 1q82, 1rnb, 1uvk, 1xam, 279d, 2dwl, 2dwm, 2dwn, 2ht1, 2htt, 2ok0, 2pjr, 2vrt, 3er9, 3j0l, 3j0o, 3j0p, 3j0q, 3j5l, 3ngz, 3nma, 3ra4, 3ra9, 3rec, 3rtj, 3u2e, 3ucu, 3ucz, 3ud3, 3ud4, 3va0, 4a3g, 4a3j, 4a8k, 4afy, 4d2c, 4dy8, 4e60, 4ejt, 4g7o, 4jzu, 4jzv, 4lq3, 4m6g, 4nia, 4nku, 4ohy, 4oi0, 4oi1, 4oq8, 4oq9, 4pei, 4qcu, 4qcw with 2 residues each.
• The PDB structure with the longest chain is 3j3f with 5,070 amino acids (alpha carbons only).
• The PDB structure with the heaviest chain is 3vkh with 383,873.23 .
• The PDB structure with the largest file is 4pth with 26,602,247 bytes (compressed).

Overall Statistics ...

• The mean PDB resolution is 2.16 ± 0.57 based on 92,668 X_Ray structures.
• The PDB structure with the smallest file is 3rec with 2,658 bytes (compressed).
• The most common Sources are Homo sapiens, present in 31,429 PDB structures and Escherichia coli, present in 12,436 PDB structures.

Updated by OCA on Wed Nov 5 11:18:42 2014

Notes

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See Also

• Atomic coordinate file
• Ligands
• NMR Ensembles of Models
• Protein Data Bank
• Resolution
• Standard Residues