This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Methyl CpG binding protein

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 15: Line 15:
== Structural highlights ==
== Structural highlights ==
 +
</StructureSection>
==3D structures of methyl CpG binding protein==
==3D structures of methyl CpG binding protein==
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
 +
{{#tree:id=OrganizedByTopic|openlevels=0|
-
===Methyl CpG binding protein 1 (MBD1)===
+
*Methyl CpG binding protein 1 (MBD1)
-
[[1ig4]] – hMBD1 MBD domain + DNA – human – NMR<br />
+
**[[1ig4]] – hMBD1 MBD domain + DNA – human – NMR<br />
-
[[1d9n]] - hMBD1 MBD domain – NMR
+
**[[1d9n]] - hMBD1 MBD domain – NMR
-
===Methyl CpG binding protein 2 (MBD2)===
+
*Methyl CpG binding protein 2 (MBD2)
-
[[2l2l]] - hMBD2 coiled-coil domain + transcriptional repressor p66-α coiled-coil domain – NMR<br />
+
**[[2l2l]] - hMBD2 coiled-coil domain + transcriptional repressor p66-α coiled-coil domain – NMR<br />
-
===Methyl CpG binding protein 3 (MBD3)===
+
*Methyl CpG binding protein 3 (MBD3)
-
[[2mb7]] – hMBD3 MBD domain – NMR<br />
+
**[[2mb7]] – hMBD3 MBD domain – NMR<br />
-
===Methyl CpG binding protein 4 (MBD4)===
+
*Methyl CpG binding protein 4 (MBD4)
-
[[1ngn]] - MBD4 glycosylate domain – mouse<br />
+
**[[1ngn]] - MBD4 glycosylate domain – mouse<br />
-
[[3iho]], [[4e9e]] – hMBD4 glycosylate domain<br />
+
**[[3iho]], [[4e9e]] – hMBD4 glycosylate domain<br />
-
[[4e9g]] – hMBD4 glycosylate domain + DNA <br />
+
**[[4e9g]] – hMBD4 glycosylate domain + DNA <br />
-
[[4dk9]], [[4e9f]] – hMBD4 glycosylate domain + DNA containing abasic dideoxyribose<br />
+
**[[4dk9]], [[4e9f]] – hMBD4 glycosylate domain + DNA containing abasic dideoxyribose<br />
-
[[4ew4]] – mMBD4 glycosylate domain + DNA containing abasic dideoxyribose<br />
+
**[[4ew4]] – mMBD4 glycosylate domain + DNA containing abasic dideoxyribose<br />
-
[[4evv]] – mMBD4 glycosylate domain + DNA containing mismatch<br />
+
**[[4evv]] – mMBD4 glycosylate domain + DNA containing mismatch<br />
-
[[4ew0]] – mMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />
+
**[[4ew0]] – mMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />
-
[[4e9h]], [[4ea4]], [[4ea5]] – hMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />
+
**[[4e9h]], [[4ea4]], [[4ea5]] – hMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />
-
[[3vxv]], [[3vxx]], [[3vyb]], [[3vyq]] – mMBD4 MBD + DNA containing cytidine derivative<br />
+
**[[3vxv]], [[3vxx]], [[3vyb]], [[3vyq]] – mMBD4 MBD + DNA containing cytidine derivative<br />
-
[[4lg7]] – hMBD4 MBD + DNA containing cytidine derivative<br />
+
**[[4lg7]] – hMBD4 MBD + DNA containing cytidine derivative<br />
-
===Methyl CpG binding protein 2 (MeCP2)===
+
*Methyl CpG binding protein 2 (MeCP2)
-
 
+
-
[[1qk9]] - hMeCP2 MBD domain – NMR<br />
+
-
[[3c2i]] – hMeCP2 MBD domain (mutant) + DNA<br />
+
-
[[1ub1]] – cMeCP2 attachment-region binding domain – chicken – NMR<br />
+
-
[[2ky8]] – cMBD4 MBD + DNA containing cytidine and uridine derivatives - NMR<br />
+
 +
**[[1qk9]] - hMeCP2 MBD domain – NMR<br />
 +
**[[3c2i]] – hMeCP2 MBD domain (mutant) + DNA<br />
 +
**[[1ub1]] – cMeCP2 attachment-region binding domain – chicken – NMR<br />
 +
**[[2ky8]] – cMBD4 MBD + DNA containing cytidine and uridine derivatives - NMR<br />
 +
}}
== References ==
== References ==

Revision as of 09:24, 1 December 2014

Structure of mouse MBD4 glycosylate domain complex with DNA containing mismatch, ethylene glycol and Ni+2 ion (green) (PDB code 4evv).

Drag the structure with the mouse to rotate

3D structures of methyl CpG binding protein

Updated on 01-December-2014

References

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky

Retrieved from "http://52.214.119.220/wiki/index.php/Methyl_CpG_binding_protein"
Personal tools