3nk7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3nk7" [edit=sysop:move=sysop])
Line 1: Line 1:
-
{{STRUCTURE_3nk7| PDB=3nk7 | SCENE= }}
+
==Structure of the Nosiheptide-resistance methyltransferase S-adenosyl-L-methionine Complex==
-
===Structure of the Nosiheptide-resistance methyltransferase S-adenosyl-L-methionine Complex===
+
<StructureSection load='3nk7' size='340' side='right' caption='[[3nk7]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
{{ABSTRACT_PUBMED_20550164}}
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3nk7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_actuosus Streptomyces actuosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NK7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NK7 FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
 +
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3nk6|3nk6]]</td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nsr ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1885 Streptomyces actuosus])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nk7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nk7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3nk7 RCSB], [http://www.ebi.ac.uk/pdbsum/3nk7 PDBsum]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nk/3nk7_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Nosiheptide-resistance methyltransferase (NHR) of Streptomyces actuosus is a class IV methyltransferase of the SpoU family and methylates 23S rRNA at nucleotide Adenosine corresponding to A1067 in Escherichia Coli. Such methylation is essential for resistance against nosiheptide, a sulphur peptide antibiotic, which is produced by the nosiheptide -producing strain, Streptomyces actuosus. Here, we report the crystal structures of NHR and NHR in complex with SAM (S-adenosyl-L-methionine) at 2.0 and 2.1 A resolution, respectively. NHR forms a functional homodimer and dimerization is required for methyltransferase activity. The monomeric NHR is comprised of N-terminal RNA binding domain (NTD) and C-terminal catalytic domain (CTD). Overall, the structure of NHR suggests that the methyltransferase activity is achieved by "reading" the RNA substrate with NTD and "adding" methyl group using CTD. Comprehensive mutagenesis and methyltransferase activity assays reveal critical regions for SAM binding in CTD and loops (L1 and L3) essential for RNA recognition in NTD. Finally, the catalytic mechanism and structural model that NHR recognize 23S rRNA is proposed based on the structural and biochemical analyses. Thus, our systematic structural studies reveal the substrate recognition and modification by the nosiheptide-resistance methyltransferase.
-
==Function==
+
Crystal Structure of the Nosiheptide Resistance Methyltransferase of Streptomyces actuosus.,Yang H, Wang Z, Shen Y, Wang P, Jia X, Zhao L, Zhou P, Gong R, Li Z, Yang Y, Chen D, Murchie A, Xu Y Biochemistry. 2010 Jun 15. PMID:20550164<ref>PMID:20550164</ref>
-
[[http://www.uniprot.org/uniprot/NHS_STRAS NHS_STRAS]] Confers resistance to antibiotic nosiheptide.
+
-
==About this Structure==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[3nk7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_actuosus Streptomyces actuosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NK7 OCA].
+
</div>
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:020550164</ref><references group="xtra"/><references/>
+
__TOC__
 +
</StructureSection>
[[Category: Streptomyces actuosus]]
[[Category: Streptomyces actuosus]]
-
[[Category: Murchie, A.]]
+
[[Category: Murchie, A]]
-
[[Category: Shen, Y.]]
+
[[Category: Shen, Y]]
-
[[Category: Wang, P.]]
+
[[Category: Wang, P]]
-
[[Category: Wang, Z.]]
+
[[Category: Wang, Z]]
-
[[Category: Xu, Y.]]
+
[[Category: Xu, Y]]
-
[[Category: Yang, H.]]
+
[[Category: Yang, H]]
[[Category: 23s rrna methyltransferase]]
[[Category: 23s rrna methyltransferase]]
[[Category: Nosiheptide]]
[[Category: Nosiheptide]]

Revision as of 15:40, 18 December 2014

Structure of the Nosiheptide-resistance methyltransferase S-adenosyl-L-methionine Complex

3nk7, resolution 2.10Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools