3vvt

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{{STRUCTURE_3vvt| PDB=3vvt | SCENE= }}
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==Crystal structure of reconstructed archaeal ancestral NDK, Arc1==
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===Crystal structure of reconstructed archaeal ancestral NDK, Arc1===
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<StructureSection load='3vvt' size='340' side='right' caption='[[3vvt]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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{{ABSTRACT_PUBMED_23776221}}
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3vvt]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VVT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VVT FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vvu|3vvu]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nucleoside-diphosphate_kinase Nucleoside-diphosphate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.4.6 2.7.4.6] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vvt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vvt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vvt RCSB], [http://www.ebi.ac.uk/pdbsum/3vvt PDBsum]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Theoretical studies have focused on the environmental temperature of the universal common ancestor of life with conflicting conclusions. Here we provide experimental support for the existence of a thermophilic universal common ancestor. We present the thermal stabilities and catalytic efficiencies of nucleoside diphosphate kinases (NDK), designed using the information contained in predictive phylogenetic trees, that seem to represent the last common ancestors of Archaea and of Bacteria. These enzymes display extreme thermal stabilities, suggesting thermophilic ancestries for Archaea and Bacteria. The results are robust to the uncertainties associated with the sequence predictions and to the tree topologies used to infer the ancestral sequences. Moreover, mutagenesis experiments suggest that the universal ancestor also possessed a very thermostable NDK. Because, as we show, the stability of an NDK is directly related to the environmental temperature of its host organism, our results indicate that the last common ancestor of extant life was a thermophile that flourished at a very high temperature.
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==About this Structure==
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Experimental evidence for the thermophilicity of ancestral life.,Akanuma S, Nakajima Y, Yokobori S, Kimura M, Nemoto N, Mase T, Miyazono K, Tanokura M, Yamagishi A Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11067-72. doi:, 10.1073/pnas.1308215110. Epub 2013 Jun 17. PMID:23776221<ref>PMID:23776221</ref>
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[[3vvt]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VVT OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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<ref group="xtra">PMID:023776221</ref><references group="xtra"/><references/>
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</div>
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==See Also==
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*[[Nucleoside diphosphate kinase|Nucleoside diphosphate kinase]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Nucleoside-diphosphate kinase]]
[[Category: Nucleoside-diphosphate kinase]]
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[[Category: Akanuma, S.]]
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[[Category: Akanuma, S]]
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[[Category: Kimura, M.]]
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[[Category: Kimura, M]]
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[[Category: Miyazono, K.]]
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[[Category: Miyazono, K]]
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[[Category: Nemoto, N.]]
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[[Category: Nemoto, N]]
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[[Category: Tanokura, M.]]
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[[Category: Tanokura, M]]
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[[Category: Yamagishi, A.]]
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[[Category: Yamagishi, A]]
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[[Category: Yokobori, S.]]
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[[Category: Yokobori, S]]
[[Category: Ancestor]]
[[Category: Ancestor]]
[[Category: Archaea]]
[[Category: Archaea]]
[[Category: Ndk]]
[[Category: Ndk]]
[[Category: Transferase]]
[[Category: Transferase]]

Revision as of 07:14, 21 December 2014

Crystal structure of reconstructed archaeal ancestral NDK, Arc1

3vvt, resolution 2.40Å

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