4kh1
From Proteopedia
(Difference between revisions)
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- | + | ==The R state structure of E. coli ATCase with CTP,UTP, and Magnesium bound== | |
- | + | <StructureSection load='4kh1' size='340' side='right' caption='[[4kh1]], [[Resolution|resolution]] 2.20Å' scene=''> | |
- | + | == Structural highlights == | |
+ | <table><tr><td colspan='2'>[[4kh1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoko Ecoko]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KH1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4KH1 FirstGlance]. <br> | ||
+ | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CTP:CYTIDINE-5-TRIPHOSPHATE'>CTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PAL:N-(PHOSPHONACETYL)-L-ASPARTIC+ACID'>PAL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=UTP:URIDINE+5-TRIPHOSPHATE'>UTP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
+ | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4kgv|4kgv]], [[4kgx|4kgx]], [[4kgz|4kgz]], [[4kh0|4kh0]]</td></tr> | ||
+ | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pyrB, EKO11_4066, KO11_22860 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=595495 ECOKO]), pyrI, EKO11_4067, KO11_22855 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=595495 ECOKO])</td></tr> | ||
+ | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Aspartate_carbamoyltransferase Aspartate carbamoyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.3.2 2.1.3.2] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4kh1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kh1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4kh1 RCSB], [http://www.ebi.ac.uk/pdbsum/4kh1 PDBsum]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | For nearly 60 years, the ATP activation and the CTP inhibition of Escherichia coli aspartate transcarbamoylase (ATCase) has been the textbook example of allosteric regulation. We present kinetic data and five X-ray structures determined in the absence and presence of a Mg(2+) concentration within the physiological range. In the presence of 2 mM divalent cations (Mg(2+), Ca(2+), Zn(2+)), CTP does not significantly inhibit the enzyme, while the allosteric activation by ATP is enhanced. The data suggest that the actual allosteric inhibitor of ATCase in vivo is the combination of CTP, UTP, and a divalent cation, and the actual allosteric activator is a divalent cation with ATP or ATP and GTP. The structural data reveals that two NTPs can bind to each allosteric site with a divalent cation acting as a bridge between the triphosphates. Thus, the regulation of ATCase is far more complex than previously believed and calls many previous studies into question. The X-ray structures reveal that the catalytic chains undergo essentially no alternations; however, several regions of the regulatory chains undergo significant structural changes. Most significant is that the N-terminal region of the regulatory chains exists in different conformations in the allosterically activated and inhibited forms of the enzyme. Here, a new model of allosteric regulation is proposed. | ||
- | + | New Paradigm for Allosteric Regulation of Escherichia coli Aspartate Transcarbamoylase.,Cockrell GM, Zheng Y, Guo W, Peterson AW, Truong JK, Kantrowitz ER Biochemistry. 2013 Nov 12;52(45):8036-47. doi: 10.1021/bi401205n. Epub 2013 Oct, 31. PMID:24138583<ref>PMID:24138583</ref> | |
- | + | ||
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
- | == | + | ==See Also== |
- | + | *[[Aspartate carbamoyltransferase|Aspartate carbamoyltransferase]] | |
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
[[Category: Aspartate carbamoyltransferase]] | [[Category: Aspartate carbamoyltransferase]] | ||
- | [[Category: Cockrell, G M | + | [[Category: Ecoko]] |
- | [[Category: Guo, W | + | [[Category: Cockrell, G M]] |
- | [[Category: Kantrowitz, E R | + | [[Category: Guo, W]] |
- | [[Category: Peterson, A W | + | [[Category: Kantrowitz, E R]] |
- | [[Category: Zheng, Y | + | [[Category: Peterson, A W]] |
+ | [[Category: Zheng, Y]] | ||
[[Category: Allostery]] | [[Category: Allostery]] | ||
[[Category: Competing pathway product activation]] | [[Category: Competing pathway product activation]] |
Revision as of 16:20, 21 December 2014
The R state structure of E. coli ATCase with CTP,UTP, and Magnesium bound
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