Sandbox Reserved 1086

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{{UniHelsinki_ProteinCourse_2015}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
{{UniHelsinki_ProteinCourse_2015}}<!-- PLEASE ADD YOUR CONTENT BELOW HERE -->
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==Example page for Green fluorescent protein (''''GFP'''')==
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==''''C-cadherin''''==
<StructureSection load='1Q5A' size='340' side='right' caption='C-cadherine (PDB entry [[1Q5A]])' scene=''>
<StructureSection load='1Q5A' size='340' side='right' caption='C-cadherine (PDB entry [[1Q5A]])' scene=''>
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Green fluorescent protein ('''GFP'''), originally isolated from the jellyfish ''Aequorea victoria'' (PDB entry [[1ema]]), fluorsceses green (509nm) when exposed to blue light (395nm and 475nm). It is one of the most important proteins used in biological research because it can be used to tag otherwise invisible gene products of interest and thus observe their existence, location and movement.
Green fluorescent protein ('''GFP'''), originally isolated from the jellyfish ''Aequorea victoria'' (PDB entry [[1ema]]), fluorsceses green (509nm) when exposed to blue light (395nm and 475nm). It is one of the most important proteins used in biological research because it can be used to tag otherwise invisible gene products of interest and thus observe their existence, location and movement.
Exploring the Structure
Exploring the Structure
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== Structural highlights ==
 
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<table><tr><td colspan='2'>[[1q5a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. The March 2008 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Cadherin'' by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2008_3 10.2210/rcsb_pdb/mom_2008_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q5A FirstGlance]. <br>
 
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
 
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1l3w|1l3w]], [[1q55|1q55]], [[1q5b|1q5b]], [[1q5c|1q5c]]</td></tr>
 
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q5a RCSB], [http://www.ebi.ac.uk/pdbsum/1q5a PDBsum]</span></td></tr>
 
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</table>
 
== Exploring the Structure ==
== Exploring the Structure ==
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</StructureSection>
</StructureSection>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1q5a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. The March 2008 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Cadherin'' by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2008_3 10.2210/rcsb_pdb/mom_2008_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q5A FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1l3w|1l3w]], [[1q55|1q55]], [[1q5b|1q5b]], [[1q5c|1q5c]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q5a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q5a RCSB], [http://www.ebi.ac.uk/pdbsum/1q5a PDBsum]</span></td></tr>
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</table>
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== References ==
== References ==
<references/>
<references/>

Revision as of 11:43, 20 April 2015

This Sandbox is Reserved from 15/04/2015, through 15/06/2015 for use in the course "Protein structure, function and folding" taught by Taru Meri at the University of Helsinki. This reservation includes Sandbox Reserved 1081 through Sandbox Reserved 1090.
To get started:
  • Click the edit this page tab at the top. Save the page after each step, then edit it again.
  • Click the 3D button (when editing, above the wikitext box) to insert Jmol.
  • show the Scene authoring tools, create a molecular scene, and save it. Copy the green link into the page.
  • Add a description of your scene. Use the buttons above the wikitext box for bold, italics, links, headlines, etc.

More help: Help:Editing

'C-cadherin'

C-cadherine (PDB entry 1Q5A)

Drag the structure with the mouse to rotate


Structural highlights

1q5a is a 2 chain structure with sequence from Mus musculus. The March 2008 RCSB PDB Molecule of the Month feature on Cadherin by David S. Goodsell is 10.2210/rcsb_pdb/mom_2008_3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
Resources:FirstGlance, OCA, RCSB, PDBsum

References

  1. Ormo M, Cubitt AB, Kallio K, Gross LA, Tsien RY, Remington SJ. Crystal structure of the Aequorea victoria green fluorescent protein. Science. 1996 Sep 6;273(5280):1392-5. PMID:8703075
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