Sandbox Reserved 1120
From Proteopedia
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'''SRY-HMG''' stands for '''S'''ex determining '''R'''egion '''Y''' - '''H'''igh '''M'''obility '''G'''roup domain. | '''SRY-HMG''' stands for '''S'''ex determining '''R'''egion '''Y''' - '''H'''igh '''M'''obility '''G'''roup domain. | ||
It is approximately 80 residues long. It mediates the binding of the protein to the minor groove of DNA. | It is approximately 80 residues long. It mediates the binding of the protein to the minor groove of DNA. | ||
- | It has a Twisted L shape meaning that it has a long (28Å) and a short (22Å) arm. The HMG Box is made of 3 helices, its N-term and C-term are irregular. <ref>PMID: 7774012</ref>. the overall Structure is stabilized by a hydrophobic core. | + | It has a Twisted L shape meaning that it has a long (28Å) and a short (22Å) arm. The HMG Box is made of 3 helices, its N-term and C-term are irregular. <ref>PMID: 7774012</ref>. the overall Structure is stabilized by a hydrophobic core. |
- | The interaction between the HMG-Box and DNA is specific and stable. It permits the bend of DNA (≈75°). It is mostly hydrophobic interaction. Only one molecule of water interface the Box and the DNA. the complex is stabilized by salt bridges between positive charged residues of the HMG domain and negative charged phosphates. | + | The interaction between the HMG-Box and DNA is specific and stable. It permits the bend of DNA (≈75°). It is mostly hydrophobic interaction. Only one molecule of water interface the Box and the DNA. the complex is stabilized by salt bridges between positive charged residues of the HMG domain and negative charged phosphates.<ref>PMID: 9626701</ref> |
Even if the most important function of the HMG box is its capacity of binding DNA, it is also involved in: | Even if the most important function of the HMG box is its capacity of binding DNA, it is also involved in: | ||
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*DNA repair | *DNA repair | ||
+ | There are 2 kinds of protein that contain a HMG box | ||
+ | * HMG1 : It is expressed in few cell types. It is found in transcription factors that contain a single HMG box. The bind to a DNA sequence is specific. | ||
+ | * HMG2 : Are found in all cell types and are abundant in chromatin. This proteins can contain two or more HMG boxes that can nonspecifically bind DNA. | ||
- | |||
- | 2 kinds of HMG domain: | ||
- | * HMG1 | ||
- | * HMG2 | ||
===General structure of SRY=== | ===General structure of SRY=== | ||
+ | |||
3 domains: | 3 domains: | ||
* N-term domain | * N-term domain | ||
- | * Central domain | + | * Central domain : DNA binding (HMG box) |
* C-term domain | * C-term domain | ||
===Structure of the DNA target site=== | ===Structure of the DNA target site=== | ||
+ | The DNA target site is a DNA octamer : d(GCACAAAC). | ||
== Function == | == Function == | ||
+ | |||
===Sex determining=== | ===Sex determining=== | ||
It acts like a sex determinator thanks to it transcriptionnal activity. It inhibits the developpement of female sex structure in th embryonnic individual. | It acts like a sex determinator thanks to it transcriptionnal activity. It inhibits the developpement of female sex structure in th embryonnic individual. |
Revision as of 21:13, 25 January 2016
This Sandbox is Reserved from 15/12/2015, through 15/06/2016 for use in the course "Structural Biology" taught by Bruno Kieffer at the University of Strasbourg, ESBS. This reservation includes Sandbox Reserved 1120 through Sandbox Reserved 1159. |
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SRY protein (AKA TDF protein)
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References
- ↑ Tang Y, Nilsson L. Interaction of human SRY protein with DNA: a molecular dynamics study. Proteins. 1998 Jun 1;31(4):417-33. PMID:9626701
- ↑ Sumner, A. T. Sex Chromosomes and Sex Determination. Chromosomes: Organization and Function, 97-108. [1]
- ↑ Bridges CB. TRIPLOID INTERSEXES IN DROSOPHILA MELANOGASTER. Science. 1921 Sep 16;54(1394):252-4. PMID:17769897 doi:http://dx.doi.org/10.1126/science.54.1394.252
- ↑ Goodfellow PN, Darling SM. Genetics of sex determination in man and mouse. Development. 1988 Feb;102(2):251-8. PMID:3046910
- ↑ Jost A. Becoming a male. Adv Biosci. 1973;10:3-13. PMID:4805859
- ↑ Goodfellow PN, Darling SM. Genetics of sex determination in man and mouse. Development. 1988 Feb;102(2):251-8. PMID:3046910
- ↑ Gubbay J, Collignon J, Koopman P, Capel B, Economou A, Munsterberg A, Vivian N, Goodfellow P, Lovell-Badge R. A gene mapping to the sex-determining region of the mouse Y chromosome is a member of a novel family of embryonically expressed genes. Nature. 1990 Jul 19;346(6281):245-50. PMID:2374589 doi:http://dx.doi.org/10.1038/346245a0
- ↑ Sinclair AH, Berta P, Palmer MS, Hawkins JR, Griffiths BL, Smith MJ, Foster JW, Frischauf AM, Lovell-Badge R, Goodfellow PN. A gene from the human sex-determining region encodes a protein with homology to a conserved DNA-binding motif. Nature. 1990 Jul 19;346(6281):240-4. PMID:1695712 doi:http://dx.doi.org/10.1038/346240a0
- ↑ Werner MH, Huth JR, Gronenborn AM, Clore GM. Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex. Cell. 1995 Jun 2;81(5):705-14. PMID:7774012
- ↑ Werner MH, Huth JR, Gronenborn AM, Clore GM. Molecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex. Cell. 1995 Jun 2;81(5):705-14. PMID:7774012
- ↑ Tang Y, Nilsson L. Interaction of human SRY protein with DNA: a molecular dynamics study. Proteins. 1998 Jun 1;31(4):417-33. PMID:9626701