User:Cody Couperus/Sandbox 3

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Revision as of 18:46, 16 February 2016 (edit) Cody Couperus (Talk | contribs) ← Previous diff		Revision as of 18:48, 16 February 2016 (edit) (undo) Cody Couperus (Talk | contribs) Next diff →
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	==Structure (building blocks)==		==Structure (building blocks)==
		+	Stem loop
	Coaxial helices		Coaxial helices
	Kink-turn		Kink-turn

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Revision as of 18:48, 16 February 2016

Contents 1 RNA 2 Introduction 3 Products of Transcription 4 Post/Co-transcriptional modifications 5 Degradation pathways 6 Structure General 7 Primary Structure 8 Structure (building blocks)

RNA

Introduction

-single stranded polynucleic acid -Transcribed from DNA by family of RNA polymerases -Functional roles include functional transfer for protein synthesis, catalysis, cellular regulation -Degraded by....

Products of Transcription

Names/functional roles

Post/Co-transcriptional modifications

Degradation pathways

Structure General

Summary of - how to build a 3D structure from a linear medium. Practical considerations. How to think about folded polymers. Backbone Ribose Bases + base pairing Forces: stacking (VDW), hydrogen bond, hydrophobic effect, electrostatic

Primary Structure

Sequence Maybe some statistics?

Structure (building blocks)

Stem loop Coaxial helices Kink-turn Hook-turn Ribose zipper Kissing loops Hairpin loops Pseudoknots A-minor interactions A-major interactions Tetraloop-receptor motifs T-loop motif Triple stranded RNA RNA quadruplex structuers Metal chelation