Sandbox Reserved 1172
From Proteopedia
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The LPA1 receptor protein is composed of 364 amino acids with a mass of approximately 41 kDa. Just as other G-protein coupled receptors, LPA1 contains seven alpha helices which make up the seven transmembrane spanning domains with three intracellular loops and three extracellular loops. Within these helices is an amphiphilic binding pocket enabling the LPA molecule to bind. | The LPA1 receptor protein is composed of 364 amino acids with a mass of approximately 41 kDa. Just as other G-protein coupled receptors, LPA1 contains seven alpha helices which make up the seven transmembrane spanning domains with three intracellular loops and three extracellular loops. Within these helices is an amphiphilic binding pocket enabling the LPA molecule to bind. | ||
=== Key Ligand Interactions === | === Key Ligand Interactions === | ||
- | Three separate interactions an antagonist of LPA1, ON7, help demonstrate the key interactions that stabilize the binding of the LPA phospholipid to this receptor. At the polar region of the binding pocket, the majority of this region is stabilized by <scene name='72/721543/Arg124gln125/1'>Arg124 and Gln125</scene> forming ionic interactions with the carboxylic acid and the hydroxyl group of ON7. | + | Three separate interactions an antagonist of LPA1, ON7, help demonstrate the key interactions that stabilize the binding of the LPA phospholipid to this receptor. At the polar region of the binding pocket, the majority of this region is stabilized by <scene name='72/721543/Arg124gln125/1'>Arg124 and Gln125</scene> forming ionic and polar interactions with the carboxylic acid and the hydroxyl group of ON7. In addition, interplay between <scene name='72/721543/Lys39_and_glu293/4'>Glu293 and Lys39</scene> causes another stabilizing component of the ON7 antagonist. Glu293 forms polar interactions with Lys39, positioning it in close proximity to to the carboxylic acid of ON7, which then interactions with Lys39 via ionic bonding. |
- | <scene name='72/721543/Lys39_and_glu293/4'>GluLys</scene> | ||
<scene name='72/721543/His40/1'>His</scene> | <scene name='72/721543/His40/1'>His</scene> |
Revision as of 22:45, 28 March 2016
This Sandbox is Reserved from Jan 11 through August 12, 2016 for use in the course CH462 Central Metabolism taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1160 through Sandbox Reserved 1184. |
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Lysophosphatidic Acid Receptor 1
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