Sandbox Reserved 1172

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Lysophosphatidic Acid Receptor 1 (commonly referred to as LPA<sub>1</sub>) is a [[G protein-coupled receptor]] and one of 6 different LPA receptors (LPA<sub>1</sub>-LPA<sub>6</sub>) that bind the phospholipid derivative [https://en.wikipedia.org/wiki/Lysophosphatidic_acid lysophosphatidic acid (LPA)], a signaling molecule that acts as a potent [https://en.wikipedia.org/wiki/Mitogen mitogen] upon binding to one of its six receptors.<ref name="regpeps">PMID: 26091040</ref>, ----------- LPA<sub>1</sub> is part of the larger EDG receptor family(link) which includes the more widely known sphingosine 1-phopshate receptors.
Lysophosphatidic Acid Receptor 1 (commonly referred to as LPA<sub>1</sub>) is a [[G protein-coupled receptor]] and one of 6 different LPA receptors (LPA<sub>1</sub>-LPA<sub>6</sub>) that bind the phospholipid derivative [https://en.wikipedia.org/wiki/Lysophosphatidic_acid lysophosphatidic acid (LPA)], a signaling molecule that acts as a potent [https://en.wikipedia.org/wiki/Mitogen mitogen] upon binding to one of its six receptors.<ref name="regpeps">PMID: 26091040</ref>, ----------- LPA<sub>1</sub> is part of the larger EDG receptor family(link) which includes the more widely known sphingosine 1-phopshate receptors.
== Structure ==
== Structure ==
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[[Image:ABP.png|300 px|right|thumb|Electrostatic representation of the amphipathic binding pocket of the LPA<sub>1</sub> receptor.
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[[Image:ABP.png|300 px|left|thumb|Electrostatic illustration of the amphipathic binding pocket of the LPA<sub>1</sub> receptor.]]
The LPA<sub>1</sub> receptor protein is composed of 364 amino acids with a mass of approximately 41 kDa.<ref name = 'Chun'>Chun, J., Hla, T., Spiegel, S., and Moolenaar, W.H. “Lysophospholipid Receptors: Signaling and Biochemistry.” John Wiley & Sons, Inc. (2013) pp.i-xviii. 5 Feb. 2016.' </ref>. Just as other G-protein coupled receptors, LPA<sub>1</sub> contains seven alpha helices which make up the seven transmembrane spanning domains with three intracellular loops and three extracellular loops. The amino terminus of this protein is located on the extracellular side of the membrane, while the carboxyl terminus is located on the intracellular side of the membrane. Within these helices is an amphipathic binding pocket which stabilizes the binding of its ligand, LPA.
The LPA<sub>1</sub> receptor protein is composed of 364 amino acids with a mass of approximately 41 kDa.<ref name = 'Chun'>Chun, J., Hla, T., Spiegel, S., and Moolenaar, W.H. “Lysophospholipid Receptors: Signaling and Biochemistry.” John Wiley & Sons, Inc. (2013) pp.i-xviii. 5 Feb. 2016.' </ref>. Just as other G-protein coupled receptors, LPA<sub>1</sub> contains seven alpha helices which make up the seven transmembrane spanning domains with three intracellular loops and three extracellular loops. The amino terminus of this protein is located on the extracellular side of the membrane, while the carboxyl terminus is located on the intracellular side of the membrane. Within these helices is an amphipathic binding pocket which stabilizes the binding of its ligand, LPA.
=== Key Ligand Interactions ===
=== Key Ligand Interactions ===
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[[Image:ON7.png|300 px|left|thumb|Overall structure of the LPA<sub>1</sub> receptor in tan interacting with its antagonist, ON7, shown in green and red sticks]]
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[[Image:ON7.png|300 px|right|thumb|Overall structure of the LPA<sub>1</sub> receptor in tan interacting with its antagonist, ON7, shown in green and red sticks.]]
Three separate interactions with an antagonist of LPA<sub>1</sub>, ON7, help demonstrate the key interactions that stabilize the binding of the LPA phospholipid to this receptor. At the polar region of the binding pocket, the majority of this region is stabilized by <scene name='72/721543/Arg124gln125/1'>Arg124 and Gln125</scene> forming ionic and polar interactions with the carboxylic acid and the hydroxyl group of ON7.<ref name="regpeps">PMID: 26091040</ref> In addition, interplay between <scene name='72/721543/Lys39_and_glu293/4'>Glu293 and Lys39</scene> causes another stabilizing component of the ON7 antagonist. Glu293 forms polar interactions with Lys39, positioning it in close proximity to to the carboxylic acid of ON7, which then interactions with Lys39 via ionic bonding.<ref name="regpeps">PMID: 26091040</ref> While Lys39 is highly conserved among all six LPA receptors, a His40 residue is present that is specific to the LPA<sub>1</sub> receptor. <scene name='72/721543/His40/1'>His40</scene> forms both ionic and polar interactions with the carboxylic acid of ON7. The protonation of this residue has been found to greatly affect the binding affinity of LPA, and is an important link to tumor growth and survival in acidic environments.<ref name="regpeps">PMID: 26091040</ref>
Three separate interactions with an antagonist of LPA<sub>1</sub>, ON7, help demonstrate the key interactions that stabilize the binding of the LPA phospholipid to this receptor. At the polar region of the binding pocket, the majority of this region is stabilized by <scene name='72/721543/Arg124gln125/1'>Arg124 and Gln125</scene> forming ionic and polar interactions with the carboxylic acid and the hydroxyl group of ON7.<ref name="regpeps">PMID: 26091040</ref> In addition, interplay between <scene name='72/721543/Lys39_and_glu293/4'>Glu293 and Lys39</scene> causes another stabilizing component of the ON7 antagonist. Glu293 forms polar interactions with Lys39, positioning it in close proximity to to the carboxylic acid of ON7, which then interactions with Lys39 via ionic bonding.<ref name="regpeps">PMID: 26091040</ref> While Lys39 is highly conserved among all six LPA receptors, a His40 residue is present that is specific to the LPA<sub>1</sub> receptor. <scene name='72/721543/His40/1'>His40</scene> forms both ionic and polar interactions with the carboxylic acid of ON7. The protonation of this residue has been found to greatly affect the binding affinity of LPA, and is an important link to tumor growth and survival in acidic environments.<ref name="regpeps">PMID: 26091040</ref>

Revision as of 20:57, 29 March 2016

This Sandbox is Reserved from Jan 11 through August 12, 2016 for use in the course CH462 Central Metabolism taught by R. Jeremy Johnson at the Butler University, Indianapolis, USA. This reservation includes Sandbox Reserved 1160 through Sandbox Reserved 1184.
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Lysophosphatidic Acid Receptor 1

Cartoon representation of the LPA1 protein and its antagonist, ON7, colored in white. (PDB code 4Z34)

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References

  1. 1.0 1.1 1.2 1.3 Chrencik JE, Roth CB, Terakado M, Kurata H, Omi R, Kihara Y, Warshaviak D, Nakade S, Asmar-Rovira G, Mileni M, Mizuno H, Griffith MT, Rodgers C, Han GW, Velasquez J, Chun J, Stevens RC, Hanson MA. Crystal Structure of Antagonist Bound Human Lysophosphatidic Acid Receptor 1. Cell. 2015 Jun 18;161(7):1633-43. doi: 10.1016/j.cell.2015.06.002. PMID:26091040 doi:http://dx.doi.org/10.1016/j.cell.2015.06.002
  2. Chun, J., Hla, T., Spiegel, S., and Moolenaar, W.H. “Lysophospholipid Receptors: Signaling and Biochemistry.” John Wiley & Sons, Inc. (2013) pp.i-xviii. 5 Feb. 2016.'
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