Sandbox Reserved 1178
From Proteopedia
(Difference between revisions)
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====Disulfide Bond==== | ====Disulfide Bond==== | ||
[[Image:Disulfide_Bond_Ray_Traced.png|100 px|left|thumb|Figure Legend]] | [[Image:Disulfide_Bond_Ray_Traced.png|100 px|left|thumb|Figure Legend]] | ||
- | == | + | = TAK-875 Binding = |
+ | Tak-875 is known to be a [https://en.wikipedia.org/wiki/Partial_agonist partial agonist] of GPR40. The bonding of this ligand to the bonding site is fairly unique, as it is proposed that the ligand must enter through the [https://en.wikipedia.org/wiki/Cell_membrane membrane bilayer]. This is performed via a method similar to ligand binding to sphingosine 1-phosphate receptor 1 [[:3v2w]] (3V2W) (proteopedia), retinal loading of opsin [[:4j4q]] (4J4Q) (proteopedia) and the entry of anandamide in [https://en.wikipedia.org/wiki/Cannabinoid_receptor cannabinoid receptors] (proteopedia), in which extracellular loops block the binding from the extracellular matrix (Hanson Et al., 2012). In contrast, delta opioid receptor binding [[:4ej4]] pdb (4EJ4) allow for binding directly from the [https://en.wikipedia.org/wiki/Extracellular_matrix extracellular matrix]. The binding mechanism through the bilayer may be selectively favoring the free fatty acid because of the [https://en.wikipedia.org/wiki/Chemical_polarity#Nonpolar_molecules non-polar] regions of the ligand. | ||
== Disease == | == Disease == |
Revision as of 17:10, 1 April 2016
GPR40 bound to TAK-875
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644