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== Sodium Binding Pocket ==
== Sodium Binding Pocket ==
[[Image:4XEE closed sodium pocket.png|100 px|left|thumb|Figure 2: Closed form of sodium binding pocket that caps the entrance of sodium into the top of the binding pocket. (PDB Code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4XEE 4XEE])]]
[[Image:4XEE closed sodium pocket.png|100 px|left|thumb|Figure 2: Closed form of sodium binding pocket that caps the entrance of sodium into the top of the binding pocket. (PDB Code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4XEE 4XEE])]]
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[[Image:4GRV open binding pocket.png|100 px|left|thumb|Figure 3: Open form of sodium binding pocket that does not cap the entrance of sodium into the top of the binding pocket. (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV])]] Conserved across all class A GPCRs, a <scene name='72/727765/Sodium_binding_pocket_final/1'>sodium binding pocket</scene> PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV] is seen in the middle of TM2 helix. The sodium ion is coordinated with a highly conserved Asp113 and four other oxygen contacts from a combination of water molecules. For G-protein activation to be possible, a hydrogen bond coordination with T156, S362, and N365 of the NPxxY [https://en.wikipedia.org/wiki/Structural_motif motif] must occur. Trp321 helps to maintain the active conformation of the receptor by occluding the top of the binding pocket using [https://en.wikipedia.org/wiki/Van_der_Waals_force Van der Waals] interactions (Figure 2). The form of the binding pocket where Trp321 does not occlude the top of the pocket can be seen when mutations to A86L, G215A, and V360A are present (Figure 3). This form of the receptor would allow more sodium into the binding pocket. The binding of sodium within this site disrupts the coordination of the hydrogen bonds and places the receptor in its uncollapsed, inactive form. <ref name="Katritch">PMID:24767681</ref>
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[[Image:4GRV open binding pocket.png|100 px|left|thumb|Figure 3: Open form of sodium binding pocket that does not cap the entrance of sodium into the top of the binding pocket. (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV])]] Conserved across all class A GPCRs, a <scene name='72/727765/Sodium_binding_pocket_final/1'>sodium binding pocket</scene> (PDB code:[http://www.rcsb.org/pdb/explore/explore.do?structureId=4GRV 4GRV]) is seen in the middle of TM2 helix. The sodium ion is coordinated with a highly conserved Asp113 and four other oxygen contacts from a combination of water molecules. For G-protein activation to be possible, a hydrogen bond coordination with T156, S362, and N365 of the NPxxY [https://en.wikipedia.org/wiki/Structural_motif motif] must occur. Trp321 helps to maintain the active conformation of the receptor by occluding the top of the binding pocket using [https://en.wikipedia.org/wiki/Van_der_Waals_force Van der Waals] interactions (Figure 2). The form of the binding pocket where Trp321 does not occlude the top of the pocket can be seen when mutations to A86L, G215A, and V360A are present (Figure 3). This form of the receptor would allow more sodium into the binding pocket. The binding of sodium within this site disrupts the coordination of the hydrogen bonds and places the receptor in its uncollapsed, inactive form. <ref name="Katritch">PMID:24767681</ref>
=== Allosteric Effects ===
=== Allosteric Effects ===
Sodium ions are a negative [https://en.wikipedia.org/wiki/Allosteric_regulation allosteric] inhibitor to the binding of the neurotensin [https://en.wikipedia.org/wiki/Agonist agonist] to the binding site on the neurotensin receptor. Sodium's binding causes for the receptor to favor its inactive state. Asp113 of the highly conserved D/RY motif and Asn365 of the highly conserved NPxxY motif form a substantial hydrogen bonding network with T156 and S362.<ref name="Krumm"/> This hydrogen bonding network prevents the incorporation of the sodium ion by collapsing upon itself and filling the sodium binding pocket. Trp321 also works to inhibit the incorporation of the sodium ion by capping off the sodium binding pocket to not allow sodium to enter from the top. Trp321 uses Van der Waals interactions to place it in the conformation necessary to block sodium from entering the site. By not allowing for sodium to enter this binding site, the receptor is able to conform to its active state and activate the G-protein that is associated with it.
Sodium ions are a negative [https://en.wikipedia.org/wiki/Allosteric_regulation allosteric] inhibitor to the binding of the neurotensin [https://en.wikipedia.org/wiki/Agonist agonist] to the binding site on the neurotensin receptor. Sodium's binding causes for the receptor to favor its inactive state. Asp113 of the highly conserved D/RY motif and Asn365 of the highly conserved NPxxY motif form a substantial hydrogen bonding network with T156 and S362.<ref name="Krumm"/> This hydrogen bonding network prevents the incorporation of the sodium ion by collapsing upon itself and filling the sodium binding pocket. Trp321 also works to inhibit the incorporation of the sodium ion by capping off the sodium binding pocket to not allow sodium to enter from the top. Trp321 uses Van der Waals interactions to place it in the conformation necessary to block sodium from entering the site. By not allowing for sodium to enter this binding site, the receptor is able to conform to its active state and activate the G-protein that is associated with it.

Revision as of 06:54, 19 April 2016

Neurotensin Receptor (NTSR1)

Neurotensin G-Protein Coupled Receptor (PDB Codes 4GRV and 4XEE)

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References

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  10. 10.0 10.1 10.2 White JF, Noinaj N, Shibata Y, Love J, Kloss B, Xu F, Gvozdenovic-Jeremic J, Shah P, Shiloach J, Tate CG, Grisshammer R. Structure of the agonist-bound neurotensin receptor. Nature. 2012 Oct 25;490(7421):508-13. doi: 10.1038/nature11558. Epub 2012 Oct 10. PMID:23051748 doi:http://dx.doi.org/10.1038/nature11558
  11. Katritch V, Fenalti G, Abola EE, Roth BL, Cherezov V, Stevens RC. Allosteric sodium in class A GPCR signaling. Trends Biochem Sci. 2014 May;39(5):233-44. doi: 10.1016/j.tibs.2014.03.002. Epub , 2014 Apr 21. PMID:24767681 doi:http://dx.doi.org/10.1016/j.tibs.2014.03.002
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  13. Kisfalvi K, Eibl G, Sinnett-Smith J, Rozengurt E. Metformin disrupts crosstalk between G protein-coupled receptor and insulin receptor signaling systems and inhibits pancreatic cancer growth. Cancer Res. 2009 Aug 15;69(16):6539-45. doi: 10.1158/0008-5472.CAN-09-0418. PMID:19679549 doi:http://dx.doi.org/10.1158/0008-5472.CAN-09-0418
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