4jwi

From Proteopedia

(Difference between revisions)

Revision as of 20:53, 4 August 2016

Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(35-43)

Structural highlights

4jwi is a 4 chain structure with sequence from Ecoli. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Related:	1dkx, 1dky, 1dkz, 3dpo, 3dpp, 3dpq, 3qnj, 4e81, 4jwc, 4jwd, 4jwe
Gene:	dnaK, groP, grpF, seg (ECOLI)
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[DNAK_ECOLI] Plays an essential role in the initiation of phage lambda DNA replication, where it acts in an ATP-dependent fashion with the DnaJ protein to release lambda O and P proteins from the preprimosomal complex. DnaK is also involved in chromosomal DNA replication, possibly through an analogous interaction with the DnaA protein. Also participates actively in the response to hyperosmotic shock.[HAMAP-Rule:MF_00332] [CTHL3_SHEEP] Exerts, in vitro, a potent antimicrobial activity. Probably due to an impairment of the function of the respiratory chain and of energy-dependent activities in the inner membrane of susceptible microorganisms (By similarity).

Publication Abstract from PubMed

Bacterial resistance against common antibiotics is an increasing health problem. New pharmaceuticals for the treatment of infections caused by resistant pathogens are needed. Small proline-rich antimicrobial peptides (PrAMPs) from insects are known to bind intracellularly to the conventional substrate binding cleft of the E. coli Hsp70 chaperone DnaK. Furthermore, bactenecins from mammals, members of the cathelicidin family, also contain potential DnaK binding sites. Crystal structures of bovine and sheep Bac7 in complex with the DnaK substrate binding domain show that the peptides bind in the forward binding mode with a leucine positioned in the central hydrophobic pocket. In most structures, proline and arginine residues preceding leucine occupy the hydrophobic DnaK binding sites -1 and -2. Within bovine Bac7, four potential DnaK binding sites were identified.

Structural Identification of DnaK Binding Sites Within Bovine and Sheep Bactenecin Bac7.,Zahn M, Kieslich B, Berthold N, Knappe D, Hoffmann R, Strater N Protein Pept Lett. 2013 Oct 25. PMID:24164259^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Zahn M, Kieslich B, Berthold N, Knappe D, Hoffmann R, Strater N. Structural Identification of DnaK Binding Sites Within Bovine and Sheep Bactenecin Bac7. Protein Pept Lett. 2013 Oct 25. PMID:24164259

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4jwi"

@@ Line 1: / Line 1: @@
 ==Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(35-43)==
 <StructureSection load='4jwi' size='340' side='right' caption='[[4jwi]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
@@ Line 7: / Line 8: @@
 <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1dkx|1dkx]], [[1dky|1dky]], [[1dkz|1dkz]], [[3dpo|3dpo]], [[3dpp|3dpp]], [[3dpq|3dpq]], [[3qnj|3qnj]], [[4e81|4e81]], [[4jwc|4jwc]], [[4jwd|4jwd]], [[4jwe|4jwe]]</td></tr>
 <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dnaK, groP, grpF, seg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jwi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4jwi RCSB], [http://www.ebi.ac.uk/pdbsum/4jwi PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4jwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jwi OCA], [http://pdbe.org/4jwi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4jwi RCSB], [http://www.ebi.ac.uk/pdbsum/4jwi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4jwi ProSAT]</span></td></tr>
 </table>
 == Function ==
@@ Line 19: / Line 20: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 4jwi" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[Heat Shock Proteins|Heat Shock Proteins]]
 == References ==
 <references/>

4jwi

From Proteopedia

Revision as of 20:53, 4 August 2016

Crystal structure of the substrate binding domain of E.coli DnaK in complex with sheep Bac7(35-43)

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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